slc31a2 (LOC107661547)


Basic Information

Item Value
gene id slc31a2
gene name LOC107661547
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1995787 ~ 1999047 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222176.1
TCTTTTTGTTTGGGCTGAGCGGTCCTCAGCTGTCCGGCTGTACGGGCGCAGAAAAATGTGGCTAATTTGGCCGTTGAGGTGCAGGGGTAATGAAAGTTTCGGTTTTGAGGCAAGGGTCCTGTCATCTGTATTAAATTTCTTTGAACTCCTCGTTAGAAGACCACGCGCGACTTCACCATGAATATGCACTTTATAGGATCCAGCAACGCCACGCTGTTGTTTGACTTCTGGGATGTGCGTGGACCTGCAGGCATGGTGTTGTCGGTCTTTGTCCTTCTACTGCTCACGGTGATCTACGAGTTTCTGAAAGTGAAGATCACTATTGGAAAACGGAATCAAGCCTCCGTTAAGCAATCATCCGCCGTGTCTTTCTCACCTGAAGCGTCTTGTTTTGCTTCCTCCGTCATGAAGCATCAAGAAGGAAGTTCTTCTCTGACCAAGCCCTCCGAGATCTCATTAGCTCCCACCGAGAATACAGCCACCACTGCTGACGCCGCCCACTGCTAG

Function

NR:

description
probable low affinity copper uptake protein 2 isoform X1

GO:

id name namespace
GO:0035434 copper ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222176.1 True 507 mRNA 0.50 7 1995787 1999047

Neighbor

gene id symbol gene type direction distance location
LOC122326700 NA coding upstream 42561 1949736 ~ 1953226 (+)
zgc:113162 LOC107692271,LOC107584524,LOC107661621,LOC107736869 coding upstream 146302 1830684 ~ 1849485 (+)
LOC122326489 camkk2,LOC107739694,LOC107736868,LOC108437385 coding upstream 165635 1809407 ~ 1830152 (+)
snrpd3l snrpd3,smd3,LOC105014836,LOC106563120 coding upstream 186948 1807195 ~ 1808839 (+)
adora2ab adora2ab,LOC107736926,LOC107600912,LOC107675636,LOC107584529,LOC107739748,LOC107661642 coding upstream 190875 1796942 ~ 1804912 (+)
LOC122326937 NA coding downstream 281534 2280581 ~ 2287288 (+)
LOC122326565 LOC107579035 coding downstream 619188 2618235 ~ 2627353 (+)
LOC122326563 LOC107579035,LOC107736917 coding downstream 632049 2631096 ~ 2656760 (+)
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding downstream 745840 2744887 ~ 2752853 (+)
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding downstream 783301 2782348 ~ 2784025 (+)
LOC122326018 NA non-coding upstream 11697 1981923 ~ 1984090 (+)
G143149 NA non-coding upstream 32767 1839332 ~ 1963020 (+)
G143153 NA non-coding upstream 51284 1873761 ~ 1944503 (+)
G143155 NA non-coding upstream 112257 1877671 ~ 1883530 (+)
G143144 NA non-coding upstream 230692 1764761 ~ 1765095 (+)
G143290 NA non-coding downstream 73127 2072174 ~ 2072661 (+)
G143315 NA non-coding downstream 182025 2181072 ~ 2181602 (+)
G143339 NA non-coding downstream 336212 2335259 ~ 2335791 (+)
G143340 NA non-coding downstream 337734 2336781 ~ 2338470 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding downstream 400025 2399072 ~ 2400069 (+)
LOC122326311 NA other upstream 766732 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 839645 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 939862 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 1189681 735722 ~ 806106 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 31057 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 234612 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 830067 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 1298943 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 1702382 3701429 ~ 3704397 (+)

Expression


Co-expression Network