LOC122326972 (LOC107706424,LOC107681105,LOC107603271)


Basic Information

Item Value
gene id LOC122326972
gene name LOC107706424,LOC107681105,LOC107603271
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5669415 ~ 5670368 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222198.1
ATGAATAACATGTCTTATCCGATGCTGACTCTAATGGTGCCCAAGGAATCTAAATCATATAggcatgtatattttatatgcttTCTTGCCTTATATGTGCTTATACTATCAATTAATATTCGCCTTGCTATGGTCATTATTATGCAGAAAGCACTTCATGAACCAATGTACATATTCTTGTGTAATCTGTGTATAAATGGAGTTTATGGAGCTACAGGATTTTATCCTAAATTTCTGTCTGATTTAATATTGGATTCATATGTGATCTCCTCTCAAATGTGTGCTTTGCAAACCTTTGTTATTTACAGTTCTTTACTTTGTGAGTTCACAATATTAACAGTGATGTCTTATGACAGATATGTGGCCATATGCAAACCTTTAGactattattcaaaattaactaaaaacacctgtgtgaaattaattttgttctcATGGATTATTCCCACATTTTCTGCCTTCAATGGCTCCCTGTTATCAAATTTGAAACCATTTTGTGCTTATCACATAGATAAATTATATTGTGACAATTGGTCAATTGTAAAACTCTCTTGTGCATCATcttttgttaataatatatatggatatattgTTGGTATAATGTCTTGTGGTTTTGAAGTTATTATCATAATATCCTATATTAAACTGATCTCTGCATCTAGAGCATctttagaaaacagaaaaaaattctgGAAAACATGTTTGCCACACTTATTATCACTGATAAATTTCTCTATTGCTATGCTTTTTGATTTCATGTACAGCAGATATGGTTCGCATGACATTCCAGAGAGTTTGCGTAATTTTTTGGCTCTTGAACTGCTTATAGTCCCACCTGTGTTCAATCCTCTGATCTATGGGTTAAATATCAGAGCAGTGCGCATAAGAGCCTTTAATTTATGTGGTGCAGCAAGAGTGAATGTTTCACATACACCAAAACGatgtaaaacataa

Function

NR:

description
PREDICTED: olfactory receptor 52D1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222198.1 True 954 mRNA 0.32 1 5669415 5670368

Neighbor

gene id symbol gene type direction distance location
or62b5 or125-3,LOC107703496,LOC107719020,LOC107573648 coding upstream 3129 5665360 ~ 5666286 (+)
or62b3 LOC107719021,LOC107703497,LOC107573649 coding upstream 6765 5661724 ~ 5662650 (+)
LOC122326971 or125-7,LOC107573644,LOC107719003,LOC107703451 coding upstream 16177 5652309 ~ 5653238 (+)
LOC122326807 LOC107742230,LOC107703498,LOC107573064,LOC107735684 coding upstream 22080 5646442 ~ 5647335 (+)
tgfb1b LOC107681095,LOC107706521,LOC107589304,LOC107703499,LOC107754964,LOC107573058 coding upstream 38106 5627008 ~ 5631309 (+)
LOC122326973 or125-1,LOC107573645,LOC107719002,LOC107719001,LOC107703447,LOC107703448 coding downstream 1976 5672344 ~ 5674110 (+)
LOC122326974 or125-1,LOC107719002,LOC107573645,LOC107719001,LOC107703448,LOC107703447,LOC107573646 coding downstream 8702 5679070 ~ 5686068 (+)
LOC122326975 or125-1,LOC107719002,LOC107573645,LOC107703448,LOC107719001,LOC107703447 coding downstream 15830 5686198 ~ 5687139 (+)
LOC122326976 LOC107719001,LOC107703447,LOC107719002,LOC107573645,LOC107703448 coding downstream 24593 5694961 ~ 5695911 (+)
or61a1 LOC107703446 coding downstream 27039 5697407 ~ 5698345 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding upstream 36564 5632041 ~ 5632851 (+)
G144081 LOC107708509 non-coding upstream 129951 5538200 ~ 5539464 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 294493 5366192 ~ 5374922 (+)
G144007 NA non-coding upstream 341010 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 517526 5151557 ~ 5151889 (+)
G144129 NA non-coding downstream 14460 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 35172 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 122496 5792864 ~ 5794604 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 259401 5929769 ~ 5930885 (+)
G144212 NA non-coding downstream 392056 6062424 ~ 6062680 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 151479 5502033 ~ 5517936 (+)
G144077 NA other upstream 158669 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 161022 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 162982 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 641369 4947584 ~ 5028046 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 62072 5732440 ~ 5735137 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 65545 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 124394 5794762 ~ 5799702 (+)
G144152 NA other downstream 177573 5847941 ~ 5849053 (+)
G144330 NA other downstream 863732 6534100 ~ 6535794 (+)

Expression


Co-expression Network