LOC122326976 (LOC107719001,LOC107703447,LOC107719002,LOC107573645,LOC107703448)


Basic Information

Item Value
gene id LOC122326976
gene name LOC107719001,LOC107703447,LOC107719002,LOC107573645,LOC107703448
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5694961 ~ 5695911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222203.1
ATGGATAACACGTCTTATCCTGTGATATTGACTCTTATGGTGCCAAAAGAAACTATATCATATAggcatgtatattttatatgttttcttttgttatacGTGTTTATCTTGTCAATTAATATTCGTCTTGTTATGGTCATTATCATGGAGAAAGCTCTTCATGAAccaatgtatgtatttttatgtcacGTGTGTATAAATGGGGTTTATGGAGCTTCAGGATTCTACCCTAAAATTCTGTCTGATTTAATATTGGATTCATATGTGATCTCCTTTCAAATGTGTGCTTTGCAAACCTATGTTATCTACAGCTCTTTACTTTCTGAGATTGCAATATTAACAGTGATGGCTTATGATAGATATATAGCCATATGCAAACCTTTAGAGTATCattccaaattaaaaaaaaacacctgcatGAAATTAATTCTGTTCTCATGGATTGTTCCCAACTGCTATTGTGTTACAGCAGCCCTATTAACAAACTTGAGGCCTATTTGTAAATATCACATTGACAAATTATATTGTGATAACTGGGCAATTGTAAAACTGTCTTGTGCATcatcatttgtaaataatatctTTGGTTATGCTATTATTGTCACATTTTTTAGCCTTATAATTTTTATCATAGTGTCCTACTTTAAACTAATCTCTGCATGTAAAGAATCTTTAGAAAGCAGAAAGAAATTCTGGCAAACATGTCTGCCACACATATTATCACTGATAAATTTCACTTCTGCCTATTTTTTTGATATCATGTATAGTAGATATGGCTCAAACGACATTTCAGAGAGTTTGCGTAATTTTTTGGCTCTAGAACTGGTGATAGTTCCACCTGTGTTCAATCCTCTGATCTATGGGTTAAATATTAGAGCAGTGCGCAAAAGAGTTTTTCCTTTATGTGTGTCACGTGCACCAAAAGATTTTCCTTCTGTAAAGGAAATTTAA

Function

NR:

description
PREDICTED: olfactory receptor 52D1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222203.1 True 951 mRNA 0.32 1 5694961 5695911

Neighbor

gene id symbol gene type direction distance location
LOC122326975 or125-1,LOC107719002,LOC107573645,LOC107703448,LOC107719001,LOC107703447 coding upstream 7822 5686198 ~ 5687139 (+)
LOC122326974 or125-1,LOC107719002,LOC107573645,LOC107719001,LOC107703448,LOC107703447,LOC107573646 coding upstream 8893 5679070 ~ 5686068 (+)
LOC122326973 or125-1,LOC107573645,LOC107719002,LOC107719001,LOC107703447,LOC107703448 coding upstream 20851 5672344 ~ 5674110 (+)
LOC122326972 LOC107706424,LOC107681105,LOC107603271 coding upstream 24593 5669415 ~ 5670368 (+)
or62b5 or125-3,LOC107703496,LOC107719020,LOC107573648 coding upstream 28675 5665360 ~ 5666286 (+)
or61a1 LOC107703446 coding downstream 1496 5697407 ~ 5698345 (+)
LOC122326977 LOC107703495,LOC107718999,LOC107703444 coding downstream 5561 5701472 ~ 5702410 (+)
pold3 pold3,LOC107706527,LOC107548157,LOC107719019,LOC107573853 coding downstream 11211 5707122 ~ 5712844 (+)
LOC122326891 rpl17,LOC107722835,LOC107700774,LOC107703598 coding downstream 227080 5922991 ~ 5925662 (+)
LOC122327012 NA coding downstream 227509 5923420 ~ 5923495 (+)
G144129 NA non-coding upstream 9864 5684828 ~ 5685097 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding upstream 62110 5632041 ~ 5632851 (+)
G144081 LOC107708509 non-coding upstream 155497 5538200 ~ 5539464 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 320039 5366192 ~ 5374922 (+)
G144007 NA non-coding upstream 366556 5327230 ~ 5328405 (+)
G144130 NA non-coding downstream 9629 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 96953 5792864 ~ 5794604 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 233858 5929769 ~ 5930885 (+)
G144212 NA non-coding downstream 366513 6062424 ~ 6062680 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 766739 6462650 ~ 6462933 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 177025 5502033 ~ 5517936 (+)
G144077 NA other upstream 184215 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 186568 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 188528 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 666915 4947584 ~ 5028046 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 36529 5732440 ~ 5735137 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 40002 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 98851 5794762 ~ 5799702 (+)
G144152 NA other downstream 152030 5847941 ~ 5849053 (+)
G144330 NA other downstream 838189 6534100 ~ 6535794 (+)

Expression


Co-expression Network