XLOC_006798 (dcaf5)


Basic Information

Item Value
gene id XLOC_006798
gene name dcaf5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36406274 ~ 36439061 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013083
TATAGGTATCTCATATCATCTTATATAAACACTCGGAAACGTTTCCATCAGTTTTCATGCATCATGTTATTTTTTGCTACAATGAACTTAAAGCGATCTCTTCTCGTGACGTCATCAGCCGTGCACCGGAGCAGGAAGTGCCGGCGGTCGGTGGGACTCTAAACAAGCCTCTGTTTTTGCTGCGCACTTTCACGCTTTACCGAGCAAACATGTAAAAAGTAGTCCGTCTAGCCGAGCTACAGTTCACCGAACCAGACCCGAGCTCAAGCCCATGCCGGCCGGGACACTCTAGCGGCGGCGTCGACACTCATTTTGTGGCGGAGAGATGAAGGAGGCGCGGGGCTGCAGCATGCGGAGCGCCGTCGGGTTTCTCTCCCGCAGGACGATCGACGGACACCCGCAGCTGAAGGAGGAGTTCCAGCGCCGCAGACTGTCCGGCTGCTCTAGCCTCTACAAGAAGGACATGCTCGGACACTTCGGCTGCGTCAACGCCATCGAGTTCTCCAACAATGGAGGCCAGTGGCTGGTGTCCGGGGGAGACGACCGCAGGGTGTTGCTGTGGCACATGGAGAAAGCAATACACTCACGGGCAAAACCAATGAAGCTGAAGGGGGAGCACCTGTCCAACATCTTCTGCCTGGCGTTTGACAGCACCAACAAGCGTGTTTTCTCAGGAGGAAATGATGAGCAGGTGATTCTGCATGACGTGGAACGTGGGGAGACGCTCAATGTCTTCTTGCATGATGACGCCGTGTATGGTCTGTCCGTCAGTCCGGTTAATGATAACGTCTTCGCCAGCTCCTCTGATGACGGAAGAGTTCTCATATGGGATACCAGAGAGCCACCACATGGAGAACCGTTCTGCTTGGCCAACTACCCCTCAGCATTTCACAGTGTGATGTTTAACCCTGTTGAGCCTCGTCTGCTGGCCACTGCAAACTCTAAAGAGGGAGTTGGACTATGGGATATCCGCAAACCCCGCAGtTCTCTGTTGCGGTACGGAGGCAGTTTGTCTCTTCAGAGTGCCATGAGTGTTCGCTTTAACAGCACGGGGACGCAGCTGCTGGCTCTGCGCAGACGTCTGCCACCCGTCCTCTATGAGCTCCACTCTCGTCTGCCCAGCTTCCAGTTTGATAACCAGGGCTACTTCAACTCCTGCACTATGAAGAGCTGCTGTTTCGCTGGCGACCGAGATCAGTACATCTTGTCTGGCTCTGATGATTTTAACCTTTACATGTGGAGAATTCCCACTGACCCTGAAGCAGGAGGCGCGGGTCGAGTGGTGAATGGGGCCTTTATGGTTTTAAAAGGTCATCGGTCCATTGTGAATCAGGTCCGCTTTAACCCTCACACGTACATGATCTGCTCCTCCGGGGTGGAGAAGGTCATCAAGGTTTGGAGTCCGTATAAGCAGCCAGACAGTTTAGGAGATCTAGAAGGCCTGGTGGAAGACAAGTCTCGCTCTCTCTACACTCATGAGGAATACATAAGCCTGGTACTCAACAGCGGGACCGGCCTGTCACACGATTATGTCAGCCAGTCAGTGCAGGAAGACCCTCGAATGATGGCCTTTTTTGACTCACTGGTTCGGCGTGAGATCGAGGGCTGGAGCTCGGACTCTGACAGCGATTTGAGCGAGGGTGCGATTCTGCAGCTGCATGCCAGAGCCCGGCGGTCGACCCGCTCCACACGATCCACACCACGATCTCCTGCTGCTGTGTCTGCCGCTCATCATAGCGACTCCGAACACTCGTCTTCATCTTCTCTAGCGGGACCTGATGTGTCCGGGAGCGAACGGACGGATCAGGATAGAAGTGGGTCACAGAGGAACCGGGCCAGACCACGTGCGTCTGCGTTTCTGCTTGATCTTGTGAACGAGGATTCAGATTCCAGTGGGTTTTGGTTAGACCCGATGCCCCGTCCCAGATCCCCTAGCCCACGTGAAAACTCAAGTCTTTCTAGCCACGCCTCCTCAGCGGGCGTAGCCTCCAGTTCAAGCTCCTCCCCCAGCTCATCTTCTAGCTCCTCCTCCAGCACTGATGGAGTTGACGAGGAGCTGCGCAGGAGCAGGATGCGACAGCGCAATGCAGCCAGATGGCGCCGCCATATTGGCTTTTCTCCAAGAGACTCGGCCCAAACACTTCACAGCGCCACAGACTCCTCCAACTATCCCAACATTTCCATCCACGATCAGTCGTCCCCCTCTTCGTCCTCAGGTGACGAAGATCGGCCTTTCAGAAATCGTGGAAAACAAAAGCCAAGTCCGTCGCACTTATCTGACAGGCAATCGCAGTCCAGATGTAGGCGCCGCATCACTTCTTCCTTCTCAGGGGCTGGGGACGGCCCTTTGGAGAGGGCGAAATCCCGAGCAGGCTTTCTGGCGGAGTCTGGGGAGGAACTGGAGCGAGGGAGAACTAGCGGAGAAGAGTTGAGTACTGTGGAGGATTTAAACCTGACACTCAGCAGTCGGACCACAGTGGCTGGTGTTAACGGACGTCCACATATTGATGAGAACTGTGGAGACTCTATACACCCAGAATGCTCTGGGGTAGAACTCGGTAAGAGCGCTGGTGATTCCAGGACCCAGGGGGAGCCCTCTGAGCGGGAGATCACCAGTGTTGCTGGGAAACGAACTTGTTCGGACTCAGGAGACGAGGATGATTCTCCATCGGAGAAGAGGGCGAAGACGTGGTGATGTCACAGCACAACTCACTGGCTCAGAGTCAAACTTGTGTTGAGTTGTTCATCCTTAGACTCTTTTTGGTTTATCATTTCTGAACCaagttctctttttctctttATATGATGTCATGCGTTCTGGGGTCACACCGCAGTGatgacactaaaaaaaaaaaagaagatattagtgaaattatgttatttgaggaaaaaaaataactgcagtgtttttgttttcatggtgTTTTAGTTCCATTGAACCTGTAACTTTTATGTTGGGGTGGTtctgcattgtttttgtttttggagaAGAAAAGGGATTTGAGAGCATTTCTGCAAGAATGCTGCTTGTGCGTTTATGTCAGTGGAACTGGGATGGAGAAGGGAGGGAGGGGGTGAAAAAGTGTTTCCATGGCAGCCTCATTGAGCAGCAGCTGTTTGAGTTGTGCATTAAAGTTCTGTTCCAGTGTTTCCACAGAAAGCCTTATGTCATGATTCTTCTTCCTCATCGGATGCCATTGTGATCTTCAATGAGCAGGAAGTTGCCTGCTGTAATTTCTAAATGAGCGTTCTCTAGGATATTGCAATGTGAGAATCATCGCCATGGTGATACATCAGTATCGGCTCTCCATCTGTCTAATGGAGTGTATTGCAGGGCCAAGTGCAAGATGTATGAGAGCATGCCgacgctggccactttattaagtacaccctAATTGAACAtctttttgtaatgtaatgtgtatttatatagtgcatttattgtgtatgaatatacactcaaagcactttaggATCATGAGCAcattctctccacaccaccaccaatgtgcagaatccacttggatgatgcgacggcagccacaggaagacgccagtgcgctcaccacacaccagctattggtggagaggagagaccgAGACCATGATTGGTAAGGGCCTATTGGGAATTTAGCCAGGACACCGGGCTTACACCCTTACTTTTTACCAGAAGTGCCAAGGGATTTTTAATTACCACAGGGAgtctcatttaaatgatttaatgtctcatctgaaagatggcgcccactgacaatatagtgtctccttcactatactggggcattaggactcacacacaGGTTGAGGCTCTGCCAGCTTCAGTGAGTAATCGGTCTTGGGCTggagggtgatatggctgtggcaactGCCTTAATGTCTTTACAACTGCCTTAATACTTTATTCCACATTGATCTGATTGCATTGACTGTCACTGCAGATTTCTCGGCTGCAAATCTCCCATTCTAGCACATCCTAAAGGTACTTTATAAAGCTGCTTTTCCACAGCACAGTAAGGTACAGTCTGCTATGACTCTGCTTAAAATGGTTGCGATTGTTTCTATAGTTGCATCACCTCTACTACCTCACTTTTTCATTTCAGGTCATCCCATCTGCTACCAGTGAAAGAAACTCATGGACCTCTTGTGCTGACACTGATGGTGCCATTtaaggtgactttttttttcttgcagtgaTATAAAAAACTGTTTAGTCATGTGAGCCAACAATACAGCAGGCCAATCAGTAATCAGCGGTAAGCATTCATCATGCTCACCATTGGTGGTACAAAGAAGTACTAGGTACATaatgcaaaaaacacaaaataaattgttCCAAATTTAGATATACCATGCagtaaaaaaagtgactttatattgaggtctggtgactgttgaAGGCCATTTGAGAATGCTGGAGTTATTGTTTTGTTCAAGAACCAGTTTGCGATAATTTGGacatttatttcatcatttacaATGCATTGGGAAAGTATTCTTAGCACTTCActttttacacttattttatgttacacccttattccaaaatggattaaattaatttatttgctcaaaattctacacacaataccccataatgtcGACGTGAAAAgactttttgaaatatttacaaatttattaaaaataaaaaacctgaaaaatcacatgtacatcagtatttacagcctttgctgtgaagctctaaattgagctcgggtacattctgtttcctctgatcattcttgagatgtttcagcagctttattggagttcacctgaggtaaattcagttgattggacatgatttgaaaaggcatacacctgtctatataaagtcccagggttgacagtgcatgtcaaagcacaaaccaagcatgaagacaaaggaattgtctaattgtctgtagatctctgagacaggattgtctcaaggcacataGCTAGGGAAGGGTACAGAAAATTTTCTGCTGCTCTGTCAGTTCCAATtggcacagtggcctccatcatgcGTAAGTGGAAGATGGTTGGAAACTCCAGGACTTTTCCTAGAGCTAGCTGGCCATTTAGGCTAAGTGATCAggagagaagggccttagtcagggaggtgatcaataacccgatggttactctgagcttcagcgttcttctgtggagggAGTAGAACCTTAcaaaaggacaaccatctgtgcagcaatccaccaatcaggcctgtatggaagagtggccagacggaagccactccttagtattcaattcaattcatctttatttctacagcacttttacaatgtagattgtgccagTAAAGGTCACTAATCAGCCCGACTTGAATTTGACAAAAGTCATCTGAAATAaagttctctggtctgatgattctttggagtgaatgcctgATGTTAAGTTTGGAGAAAACCACgtaccgctcatcaccaggctaatagcatccctacagtgaagcatggtggtgacagcatcatgctgtggtgatgtttttcagcagcaggaattgGAAGACTAGTCCGGATAGAGGGAAAGAAGAATGCAGCAATGTAGAGACATCcagaatgaaaacctgctttagagtgctcttgacctcagactggggtgacggttcatcttccagcaggtcaatgacccaaagcacaccgccaaaatatcaatggagtggcttcacaacaactcggtgtatgtccttgagtggcccagccagagcccagacccaaatcttattgaacatctctagagagatgtgaaaatggctgtacaccgttgcttcccatacacctgatagagcttgagaggttctgcaaagaggaatggccaaaaattcccaaagacaggtgtgccaagcttgtggcatcatattcaaaagactTGTGGCTGTAATTGATgctaaag
>TCONS_00013084
caGTACATCTTGTCTGGCTCTGATGATTTTAACCTTTACATGTGGAGAATTCCCACTGACCCTGAAGCAGGAGGCGCGGGTCGAGTGGTGAATGGGGCCTTTATGGTTTTAAAAGGTCATCGGTCCATTGTGAATCAGGTCCGCTTTAACCCTCACACGTACATGATCTGCTCCTCCGGGGTGGAGAAGGTCATCAAGGTTTGGAGTCCGTATAAGCAGCCAGACAGTTTAGGAGATCTAGAAGGCCTGGTGGAAGACAAGTCTCGCTCTCTCTACACTCATGAGGAATACATAAGCCTGGTACTCAACAGCGGGACCGGCCTGTCACACGATTATGTCAGCCAGTCAGTGCAGGAAGACCCTCGAATGATGGCCTTTTTTGACTCACTGGTTCGGCGTGAGATCGAGGGCTGGAGCTCGGACTCTGACAGCGATTTGAGCGAGGGTGCGATTCTGCAGCTGCATGCCAGAGCCCGGCGGTCGACCCGCTCCACACGATCCACACCACGATCTCCTGCTGCTGTGTCTGCCGCTCATCATAGCGACTCCGAACACTCGTCTTCATCTTCTCTAGCGGGACCTGATGTGTCCGGGAGCGAACGGACGGATCAGGATAGAAGTGGGTCACAGAGGAACCGGGCCAGACCACGTGCGTCTGCGTTTCTGCTTGATCTTGTGAACGAGGATTCAGATTCCAGTGGGTTTTGGTTAGACCCGATGCCCCGTCCCAGATCCCCTAGCCCACGTGAAAACTCAAGTCTTTCTAGCCACGCCTCCTCAGCGGGCGTAGCCTCCAGTTCAAGCTCCTCCCCCAGCTCATCTTCTAGCTCCTCCTCCAGCACTGATGGAGTTGACGAGGAGCTGCGCAGGAGCAGGATGCGACAGCGCAATGCAGCCAGATGGCGCCGCCATATTGGCTTTTCTCCAAGAGACTCGGCCCAAACACTTCACAGCGCCACAGACTCCTCCAACTATCCCAACATTTCCATCCACGATCAGTCGTCCCCCTCTTCGTCCTCAGGTGACGAAGATCGGCCTTTCAGAAATCGTGGAAAACAAAAGCCAAGTCCGTCGCACTTATCTGACAGGCAATCGCAGTCCAGATGTAGGCGCCGCATCACTTCTTCCTTCTCAGGGGCTGGGGACGGCCCTTTGGAGAGGGCGAAATCCCGAGCAGGCTTTCTGGCGGAGTCTGGGGAGGAACTGGAGCGAGGGAGAACTAGCGGAGAAGAGTTGAGTACTGTGGAGGATTTAAACCTGACACTCAGCAGTCGGACCACAGTGGCTGGTGTTAACGGACGTCCACATATTGATGAGAACTGTGGAGACTCTATACACCCAGAATGCTCTGGGGTAGAACTCGGTAAGAGCGCTGGTGATTCCAGGACCCAGGGGGAGCCCTCTGAGCGGGAGATCACCAGTGTTGCTGGGAAACGAACTTGTTCGGACTCAGGAGACGAGGATGATTCTCCATCGGAGAAGAGGGCGAAGACGTGGTGATGTCACAGCACAACTCACTGGCTCAGAGTCAAACTTGTGTTGAGTTGTTCATCCTTAGACTCTTTTTGGTTTATCATTTCTGAACCaagttctctttttctctttATATGATGTCATGCGTTCTGGGGTCACACCGCAGTGatgacactaaaaaaaaaaaa

Function

symbol description
dcaf5 Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF5 (DDB1 and CUL4 associated factor 5).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060929-808 Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF5 (DDB1 and CUL4 associated factor 5).

Ensembl:

ensembl_id ENSDARG00000060320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013083 False 5895 mRNA 0.48 8 36406274 36439061
TCONS_00013084 True 1661 mRNA 0.54 3 36409313 36418921

Neighbor

gene id symbol gene type direction distance location
XLOC_006797 CR361558.1 coding downstream 6899 36399260 ~ 36399375 (-)
XLOC_006796 actn1 coding downstream 14772 36321088 ~ 36391502 (-)
XLOC_006795 cox16 coding downstream 86966 36311894 ~ 36319308 (-)
XLOC_006794 slc8a3 coding downstream 141413 36196778 ~ 36264861 (-)
XLOC_006793 map3k9 coding downstream 221573 36164639 ~ 36184701 (-)
XLOC_006799 pacs2 coding upstream 7126 36446187 ~ 36525982 (-)
XLOC_006800 srsf5a coding upstream 87745 36526806 ~ 36535128 (-)
XLOC_006801 FP103009.1 coding upstream 98365 36537426 ~ 36545258 (-)
XLOC_006802 synj2bp coding upstream 118144 36557205 ~ 36566260 (-)
XLOC_006803 lgals3a coding upstream 129574 36568635 ~ 36582341 (-)
XLOC_006471 BX537274.2 misc downstream 26141369 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35580049 825904 ~ 826225 (-)
XLOC_006785 BX510990.1 non-coding downstream 443808 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 480790 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 813897 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 1035590 35370569 ~ 35370684 (-)
XLOC_006804 BX927407.1 non-coding upstream 148709 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 556572 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 570751 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 671151 37110212 ~ 37110536 (-)
XLOC_006819 AL845493.1 non-coding upstream 739541 37178602 ~ 37178716 (-)

Expression


Co-expression Network