LOC122326250


Basic Information

Item Value
gene id LOC122326250
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5070327 ~ 5075603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247454.1
atattgctTCTCTCGTAGTTGGAGTCTTGAGACATCAATTGTCAAGTTGCAAAAGCAGAGTGAAGTAAGAGGAAAGCGTGTCTGTGCCGCGAGATCTTTGTCAGAGACATGCTGAGAGGTCTGAGAGGGAGGGCAAGAGAAAGCTTGACACTTTGTGTAGCgcagtatttttaaaactaagtGTGAGAGCAGACaggctgcagagagagagagaggtcagagGGGTCAAGGAGGGCAGGAAAAATAACTGATAGGAAATAAGTGTGCATGACTGAAGAGCACAAGCTGACTGGAGGTGGGACTGGGGTGTGTGAGGAGAACATCTGGaCACTGACAGACGAAAACACAATACGCACTTCTACAAAAAAAGAACGGCCTGACTCGCTGACCTCCCCGGGGTTAATAATACACTGGCAGTGTGGACACAGGACGCTCAAAATGCCTAGGCACACACACCGCTCCATTTACCCGGATTATTCACTCATTTCCAAACAGCCGGGGAATTATAAAGCACCCGAAGGTTGCACGCGCAGGCCTTGAAGTGCAGGGGGTGTGTGTCTTGCTCTACCCCTGCACTCAGgatgtgtgttttgattttatgGCTCAGAGGAGGACGTGGCGTGATGACCTCAGCTCCTGACCCCAGGTCGTCTCATTCAAACCGACTGCACATAACAATCAATTTCTAATCATAACCCAAGAGTTAGTGTAAGCTCTGACCTATGCATTATTCAGCTGAGGGACAAGGGCAAGCAATGAAAGGCCCTACGCGCAaatcatgaatatttaacatgGATCTCTTTTACCAATCTACAGCGACGCTTCTCTGTAACCACAGCGATTAAACAGAATGTTGGAACAAAAAAATGACGGTGTAGGAGTATATTTATTCTCTTTTACCCCCGATCGTCGCTCACACTTGTGCCGGGAACACTTGTCTCTCCGGTTCATAACAACTGCTTGAGAGTAAATCAATAACAACAGACTGAACGAGAGTCGTGCAAATCATTATTTTCAGCCGGCATGTATGTGAGGcacatttctgagaaaaagCACACATTGCCTAGCAAACCATTTTAGAAAAACTCCATCCTGCCTCTGCCAAGCTCATCaacgtcatttattttttccatgatgaaatatatttctcatttaaatgcaaCTACCATCCTATATAAAACACTTAAGACCAACATAGCTGGAGCTTTGATTGTcattataaattgtatattgtataaattgtaatttattttattttatttgcagtgttattaatttataacattttatagtatttgtgtcttttttaatattatttaattgaatggGCTTACagcaataacattttgaaaatgattaaaacttaaaaaaaaaaaaaaagtgttatttaacAATTGTTATTTAAGAGTTTCCAGTGATGACAGTGTAAAATATTGgcaataaacatatttatttatttatttatttttgttttgtttttccaatgATATGTAAAATACCGACAATAGTAgcttttggtttatttttctttaaaattatgcatttgactaaaatatgatttttcttcTCCCTAGTTTCGTTAACTCAGCGCACTGATTTTGACTGGATTACAGACAAGCGTTGAACGTTCAATACCAAAGAATGCAAAGTCGCCAGAAACACAGAAGCTGTCTAAAATTTCACCACTGTCTGCAACAGCGTAGCACCCATTTCCTCTCTTCTGCTGTGCACTCAACTTTACAACTCATTTAGCTGTGTctattcatattaaaaagcaatttcattTATCACGTTTCTTGATAAACAGCAATGCTTgagaatgtttttgttgtgtgtcaCTGAATTGAAAAAGATGAAATTGTATTGTGCAGCTTCTTTACTCAGTTTTCTTCTGTCACTTGCGATTAAGCTGAATTCTAACATACAGCATCAGCTGTAAAGGAACTGTCCTTCCTGTAATGGTAAAGGGAGCAGAACAGCTCAATAAATGCCGGTAATATTAATAACCCACAGGATATTGTCATGTAAGGTCACTAAATGCGAGCtacgttttatttaatattgcagACTAAAGACAAACTGAAGACATGAGGTGTCCACCAACAGAAGATATGCAATGTCCTTCCTTTACAGGTTATTTTTaccacattcatttatttatttattttattttattttttaatggataACCTTTTAAACACCTTTTCAGCTAGGCATTTTACCACTCAAAATGTAGTATTGATATGTTTACAGCAGGAGATTTAAGAACctgatctttatttaatgtcccactgatttttggcataaaaaatagATACTTTTTTACCCATACAATGTTTTGttggctgttgctacaaataaGC
>XR_006247455.1
atattgctTCTCTCGTAGTTGGAGTCTTGAGACATCAATTGTCAAGTTGCAAAAGCAGAGTGAAGTAAGAGGAAAGCGTGTCTGTGCCGCGAGATCTTTGTCAGAGACATGCTGAGAGGTCTGAGAGGGAGGGCAAGAGAAAGCTTGACACTTTGTGTAGCgcagtatttttaaaactaagtGTGAGAGCAGACaggctgcagagagagagagaggtcagagGGGTCAAGGAGGGCAGGAAAAATAACTGATAGGAAATAAGTGTGCATGACTGAAGAGCACAAGCTGACTGGAGGTGGGACTGGGGTGTGTGAGGAGAACATCTGGaCACTGACAGACGAAAACACAATACGCACTTCTACAAAAAATTTCGTTAACTCAGCGCACTGATTTTGACTGGATTACAGACAAGCGTTGAACGTTCAATACCAAAGAATGCAAAGTCGCCAGAAACACAGAAGCTGTCTAAAATTTCACCACTGTCTGCAACAGCGTAGCACCCATTTCCTCTCTTCTGCTGTGCACTCAACTTTACAACTCATTTAGCTGTGTctattcatattaaaaagcaatttcattTATCACGTTTCTTGATAAACAGCAATGCTTgagaatgtttttgttgtgtgtcaCTGAATTGAAAAAGATGAAATTGTATTGTGCAGCTTCTTTACTCAGTTTTCTTCTGTCACTTGCGATTAAGCTGAATTCTAACATACAGCATCAGCTGTAAAGGAACTGTCCTTCCTGTAATGGTAAAGGGAGCAGAACAGCTCAATAAATGCCGGTAATATTAATAACCCACAGGATATTGTCATGTAAGGTCACTAAATGCGAGCtacgttttatttaatattgcagACTAAAGACAAACTGAAGACATGAGGTGTCCACCAACAGAAGATATGCAATGTCCTTCCTTTACAGGTTATTTTTaccacattcatttatttatttattttattttattttttaatggataACCTTTTAAACACCTTTTCAGCTAGGCATTTTACCACTCAAAATGTAGTATTGATATGTTTACAGCAGGAGATTTAAGAACctgatctttatttaatgtcccactgatttttggcataaaaaatagATACTTTTTTACCCATACAATGTTTTGttggctgttgctacaaataaGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247454.1 True 2363 lncRNA 0.38 3 5070327 5075603
XR_006247455.1 False 1157 lncRNA 0.39 3 5070327 5075603

Neighbor

gene id symbol gene type direction distance location
ccdc80l2 ccdc80l2,LOC107706489,LOC107589242,LOC107681168,LOC107750362 coding upstream 171742 4894027 ~ 4898585 (+)
fgf10a fgf10a,LOC107706443,LOC107589284,LOC107750480,LOC107703510,LOC107591746,LOC107681114 coding upstream 243563 4811498 ~ 4826764 (+)
rai14 rai14,LOC107681156,LOC107706485,LOC107589239,LOC107750373,LOC107703593,LOC107591710 coding upstream 276908 4761165 ~ 4793419 (+)
LOC122326163 LOC107681122,LOC107589283,LOC107706442 coding upstream 312927 4754626 ~ 4757400 (+)
amacr amacr coding upstream 340967 4720756 ~ 4729360 (+)
si:dkey-247m21.3 LOC107706496,LOC107681108,LOC107589286,LOC107591744,LOC107703507,LOC107708508 coding downstream 953 5076556 ~ 5097197 (+)
pde6b pde6b,LOC107706500,LOC107681163,LOC107708533,LOC108436964,LOC107703582 coding downstream 43491 5119094 ~ 5128226 (+)
LOC122326134 hspb11,LOC107591699,LOC107703580,LOC107681190,LOC107706446,LOC107589249,LOC107708534 coding downstream 56602 5132205 ~ 5133306 (+)
si:dkey-30k6.5 LOC107681183,LOC107706501,LOC107708532,LOC107703579,LOC107591696 coding downstream 58142 5133745 ~ 5138828 (+)
zgc:103482 zgc:103482,LOC107708531,LOC107703577,LOC107706502,LOC107681060 coding downstream 63558 5139161 ~ 5141501 (+)
LOC122326855 NA non-coding upstream 2527 5034930 ~ 5067800 (+)
G143887 NA non-coding upstream 177240 4891138 ~ 4893087 (+)
G143872 NA non-coding upstream 207924 4800102 ~ 4862403 (+)
G143827 NA non-coding upstream 318068 4751907 ~ 4752259 (+)
G143826 NA non-coding upstream 318817 4751217 ~ 4751510 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding downstream 28254 5103857 ~ 5106226 (+)
LOC122326722 NA non-coding downstream 35879 5111482 ~ 5114284 (+)
G143937 NA non-coding downstream 75954 5151557 ~ 5151889 (+)
G144007 NA non-coding downstream 251627 5327230 ~ 5328405 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding downstream 290589 5366192 ~ 5374922 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 42281 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 158511 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 325061 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 360886 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 546147 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 425500 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 426430 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 430943 5506546 ~ 5508393 (+)
G144077 NA other downstream 433062 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 656837 5732440 ~ 5735137 (+)

Expression


Co-expression Network