LOC122326582


Basic Information

Item Value
gene id LOC122326582
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 4563334 ~ 4578128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247494.1
TGGGAGCGGAACCCGCTGGAGGGGCTCGAGTAGCTCGTCCTGGTGTCCATCACCCTCCGGTAGGGGCTTCCTATAGCGTCTATCGGATAACTCATCCGGACGGACGGGGTGTGAACGTGCAGATGAACAGAAGAGTGAGTTCCCTGTGACGGAGCGGCCAGGCTCTCACCCACCACCCAACCACATCCGTTTCAGGAACTCCTGGACTCACTAAGGCGCTCCATCCATCAGTTTCACCGTCACCATCACCCACACCATCAGGACCTACACTGAAACAGACATGTCAAACATGTTGGGAAGGATATGGACACAAGGAATGTCCAGAGCACCTGTCACCCAGTCAGTCAAGTTCTCCAAGTGTCTCCTGTGTCTCTCCCAGTCCCCGAGTATCTCTGGTGATTCTTCCAGTGCTCCGTGTATCTCCGGCGATCTCCTGTGCAGACTGTGCTCCTCAAATCGTTCCTGAAAGGCAAAGAAACCCTGGTGAAACCTTCTGCTGTTTAGATACTCACACGTCTCAAGTCCAGTCTTCATTTCCTCACGTGTGTCAATAAacgtgtgtgaatatatattttacctaCCTTCTGTGTAAAGTCCATTCGGTTACATTCccttttatatacatttttttccgattaataacttttttcaataatatttttcatgtatttttttctccatgccatcctaattttaattacttgTGAATGCAGTAATTTTGCCAttgctttactttttaatatattttacttgtgtttcatttattacatgCATCTGTCTCGTATTGCACTGTATGCAAATGGTTAATGGATCCCACAGAGGTGAAAGAGGTCACTGAAAATCATCAATAAGCAATTAAATGCTCATTAACTGTTGACTTAGAGTTGTCAGTTGCAGTCTTTTCACAGCAGTACTGAAGTGTTAATACaacctcttctctctctctctctctctctctctctctctcgaatTTAATCCGTTTTATCTCCTCTTTTACATTCAGTGGTTCCACTGGGCCTCATTTGTTCACCATCTAGCATTACTCCCTCTCCTCAAATTCACAGCCAACGCCCAGCTTCTGCAGTACTGCAGTCTCTCCTTTTCCAAAAGTCTCACCCCTCCTCTTGATCACTCTCTAGTTATCTGCAGtgaggaggagggagaggaggagagatgCCGTGAGGAAGAGCACACCTCACGActcgcgctgctgctgctgctgcaacaCACCCAAGGATCACACGACGGCCTGGCAGTTCATCACAATTCATTCCATCGACAGTCACTTCGGCTCGCAGAGTCTACGTTTGCtcataactctctctctctctctctttcttgcaTGACTGTCCTCCCTCAGGCCCCTCATTAATCAGAGCTCTCTAACCCGTTGCCCTCTCACAGGAGAGACAGCATCAAGACCTTGGTTCTTCAAGCTTCTTCAAAACTCTTGGGAGGTCCTCTGTAAGCTGGCCCATAACATTGCAACAGATTTGTCCGATCTAATCCTTACTAActtgcataaaacattaaacaagaCTAAACTGCCTTTTGCTGCAtagaaaatagcattttaataattctatCCCGTTTGGTATAAGAAGAATGCCTTGATTTTGTTTTGAGTTACTGAAGGTTTAACTTACATGAAACTTTGAATAAGGCTGAACTGCATCTTCCTGCAAATGATTCATAATacattacttatttatataatgtaaaaagatATAATCTGTGACGTTTTTCTATAAGGtatcatttgttaacattagttcatgTGTTACCTAACATGActgaacaatgaacaatacatttattactctataatagtaataaactaGTAATCtagttacataataaaaaaatagatttgtttattttttgttcatggtagttcacagtgcattaactaattattaatgttaactaattatgtcaattaattagtaaatgctgaaataagcATATTATTGTTCATTCTCAGTTCAtcttaactaatgaaccttattttaaaattatcatATAATCGAATCCagaatatattaaa

Function

GO: NA

KEGG:

id description
ko04961 Endocrine and other factor-regulated calcium reabsorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247494.1 True 2047 lncRNA 0.41 3 4563334 4578128

Neighbor

gene id symbol gene type direction distance location
nefla LOC107700775,LOC107706475,LOC107589231,LOC107703600,LOC107591713,LOC107722831 coding upstream 5708 4554358 ~ 4557626 (+)
crkl crkl,LOC107706473,LOC107589229,LOC107700778,LOC107591716,LOC107722822,LOC107703602 coding upstream 18702 4538262 ~ 4544632 (+)
smpd4 smpd4,LOC107706469,LOC107700779,LOC107685262,LOC107722816 coding upstream 42505 4510370 ~ 4520829 (+)
LOC122326553 si:dkey-1d7.3,LOC107565380,LOC107566205,LOC107722807 coding upstream 204031 4338972 ~ 4359303 (+)
LOC122326555 LOC107565381,LOC107708362 coding upstream 231980 4287203 ~ 4331354 (+)
rpl17 rpl17,LOC107722835,LOC107700774,LOC107703598 coding downstream 2506 4580634 ~ 4583302 (+)
LOC122327010 NA coding downstream 2923 4581051 ~ 4581126 (+)
LOC122327008 NA coding downstream 3790 4581918 ~ 4581990 (+)
LOC122327011 NA coding downstream 4971 4583099 ~ 4583157 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773,LOC107722812,LOC107703597,LOC107591753 coding downstream 7762 4585890 ~ 4588458 (+)
G143745 NA non-coding upstream 10866 4551421 ~ 4552468 (+)
G143717 NA non-coding upstream 476808 4075527 ~ 4086526 (+)
LOC122326258 NA non-coding upstream 641615 3919733 ~ 3921719 (+)
G143664 NA non-coding upstream 759565 3803458 ~ 3803769 (+)
LOC122326834 NA non-coding upstream 793778 3763332 ~ 3769556 (+)
G143751 NA non-coding downstream 10598 4588726 ~ 4589152 (+)
G143826 NA non-coding downstream 173089 4751217 ~ 4751510 (+)
G143827 NA non-coding downstream 173779 4751907 ~ 4752259 (+)
G143872 NA non-coding downstream 221974 4800102 ~ 4862403 (+)
G143887 NA non-coding downstream 313010 4891138 ~ 4893087 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 39154 4511926 ~ 4524180 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other upstream 177122 4132436 ~ 4386212 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other upstream 349562 4106801 ~ 4213772 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other upstream 858937 3701429 ~ 3704397 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 1243321 3297990 ~ 3320013 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 127029 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 152475 4730603 ~ 4745266 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other downstream 321362 4899490 ~ 4911816 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other downstream 369456 4947584 ~ 5028046 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 922975 5501103 ~ 5506433 (+)

Expression


Co-expression Network