XLOC_006799 (pacs2)


Basic Information

Item Value
gene id XLOC_006799
gene name pacs2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36446187 ~ 36525982 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013085
ATGGCGGAGAGAAGTGGCCGGTTAAGCTTCCCCGGGAGCGGGGCGCTCAACAGACCGGTGCCAATGAACCTGTTCGCCACTTGGGAGATTGACGGCTCCTCTCCGAACTGCATCCCCAGGTTGTGTAGTCTGACTTTGAAGAAGCTGTTTGTAATGAAGGCGCTTGACAAGGAGCTGATCTCTGTTGTTATTGCAGTCAAGATtcagGGCTCGAAGCGGATCCTGCGCTCTCATGAGATAGTGCTGCCCCCTGCTGGAGGGGTGGAGACGGACCTTGCACTCACATTCTCTCTGCAGTATCCTCATTTTCTAAAGCGTGAGGGAAATAAGTTGCAAATCCTGCTTCAGAGGAGGAAGAGGTACAAAAACAGGACCATTTTGGGTTACAAGACGTTGGCTGCTGGTTCTATAGACATGGCAGAGgtGATGCAGCATCCTGCTGAAGGAGGGCAGGTCTTGGCTCTGTGCAGTAATCAGAAGGAGTTTCTGGGGAAAGTTGCAGAGATCTGGATCTATTCCCTGTCCAGTCAGCCTATAGATCATGAGGAGGCGGCCATTCTGGGACAGAAAATCAAATGCTCAGATAATTACTCGGAAGAAGAGTATGAAAGCTTCTCTTCAGAGCAGGAGGCCAGCGATGATGCAGCTCAAGGACAGGATCTGGAAGATGATGAGTACGAGATAAGGAAGCCTAAAAAGCAGAGGAGGTCAATAGTCCGGACGGCGTCCATCACCAGGCAGCAGAACTTTAAACAGCGGGTTGTGGCTTTGCTCAAACGCTTCAGAGTCTCAGATGAGGTGTTGGACTCAGAGCAGGACCCGGCTGAACCGCCTCCAGAGGTGGAGGAAGATCTGGATCTGGAGAGTCTGGATTTCGAGAATCCCAGTGACAGCGGACCAGATCTGGATGACGACGAAAGTGTTCACAGTACCCCAAAACCCAAACTCAAgCCGTATTTTGAAGGGGTTTCTCTGTCTAGCTCTCAGACAGAGATTGGCAGCATTCACAGCGTTAGGAGTCACAGAGAGCCGCCCAGTCCAATGGATCCTGATAAAGTAAGGGCTGCAGGTGGAAAGTTTCAGATGGATAATGAATCTGATCGTGTTTCTATGGGTCATCCTGAGGTTGTGACTCCTACCACAGAACTTGAGATGATGGACAGTATGGACTTTTTCATGGAGAGACTCCCTCCCATTGGCCGAATGACCAAAACTGAATCACTCATCATTCCATCCAACCGGGTGGAGCCGAAGTTGGCGGGGCGACGGGGGCGGAGCACATCACTTAAAGAGCGGCAGCCCAGTCGACCACCCAACGAGAGGGCCAACAGTCTGGACAACGAGCGCTCATTGGACACTCGCTGCCATCTACAGATTCCACGCAAAACCGTTTATGACCAGCTGAACCACATCCTGGTGTCAGACAGTCATCTGCCTGACAGCATCATCCTCATCAATACCTCTGACTGGCAGGGCCAGTATGTGTCTGAGGTGTTACAGAATCACGGTCTTCCAGTAGTGTGTACCTGCACCACGGCTGACATCCAAGCTGCCTTCAGCACCATCATCTCTCGCATTCAGAGATTTTGTAACAGTAACTCAGTGACTCCTTCTCCTGTGCGTGTCGGAGTGGCAGGAGCTCAGCATTTCCTCTCTGTGGTCTTGCGTTTGTTTGTGGATCATTTGACACACAAAACACCCGACTGGCTCGGATATCTGCGCTTCCTTATCATCCCTCTCGggGTTCATCCAGTGGCTAAATATCTGGCCAGTATAGACTACAGATATAACAGTCTGTTCCTAGACTCTGCGTGGAGAGATCTTTTCCACAAACCAGAGGCACCAACCTCAGCAGTTCAGGACAGTCCAGATGTGGTGTCCAGGATCACGCAGTATATGCTGGGGGCAAACGGAGCCCATCAGCTACCCATAGCGGAGGCCATGCTCACCTATAAGCAGAAGAGTCCTGATGAAGACTCCTGTCAGAAGTTCATCCCTTTTATTGGGATGGTGAAAGTGGGGATTGTTGAACAAACATCTGTCGCATCTGGTGACTCGGATGACGCTGCTCCTGTAGGATCTGCTCTTATGTCCTCTACTCCTCCTGCACAGATCTCCCCATTATTGAAAGAAGCATCTCCAACACCACCCTCGTCTCCGTCTGTACACATGTCCAgTTCTCCTGGGGGAGGACAGGGGGAGCTGATGGGTCTTCAGGTCGATTACTGGATTGCGCCGTCAGAACGGAAGAAAGAAGTGGAGAAGAGAGATTCGTCTGGCAAAAACACACTCAGGTGCACCTTCCGCTCACTGCAGGTTAGCCGCCTCCCACAGGGCGGAGCTGACACCACGCATCAGCCAATCATGTCCATGACTGTTGTCACCAAAGAGAAAAATAAGAAAGTGATGTTTCTGCCTAAGAAGACCAAGGATAAGGAGGCAGAGTCTAAGAGTCAGGTGATAGAAGGCATCAGCCGGCTCATCTGCACAGCCAAACACCAGCAGACCATGCTGAAAgTGTTGATAGATGGAGTCGAGTGGAACGATGTGAAGTTTTTCCAGCTCGCGGCTCAGTGGTCATCTCATGTCAAACACTTCCCTCTGGCCATCTTTGGTCCCTCAAAAGGGCCCTACTGA

Function

symbol description
pacs2 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in protein localization to plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 66. Orthologous to human PACS2 (phosphofurin acidic cluster sorting protein 2).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0044325 ion channel binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-081218-1 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in protein localization to plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 66. Orthologous to human PACS2 (phosphofurin acidic cluster sorting protein 2).

Ensembl:

ensembl_id ENSDARG00000078185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013085 True 2637 mRNA 0.51 24 36446187 36525982

Neighbor

gene id symbol gene type direction distance location
XLOC_006798 dcaf5 coding downstream 7126 36406274 ~ 36439061 (-)
XLOC_006797 CR361558.1 coding downstream 46812 36399260 ~ 36399375 (-)
XLOC_006796 actn1 coding downstream 54685 36321088 ~ 36391502 (-)
XLOC_006795 cox16 coding downstream 126879 36311894 ~ 36319308 (-)
XLOC_006794 slc8a3 coding downstream 181326 36196778 ~ 36264861 (-)
XLOC_006800 srsf5a coding upstream 824 36526806 ~ 36535128 (-)
XLOC_006801 FP103009.1 coding upstream 11444 36537426 ~ 36545258 (-)
XLOC_006802 synj2bp coding upstream 31223 36557205 ~ 36566260 (-)
XLOC_006803 lgals3a coding upstream 42653 36568635 ~ 36582341 (-)
XLOC_006804 BX927407.1 coding upstream 61788 36587770 ~ 36612159 (-)
XLOC_006471 BX537274.2 misc downstream 26181282 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35619962 825904 ~ 826225 (-)
XLOC_006785 BX510990.1 non-coding downstream 483721 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 520703 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 853810 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 1075503 35370569 ~ 35370684 (-)
XLOC_006814 NA non-coding upstream 469651 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 483830 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 584230 37110212 ~ 37110536 (-)
XLOC_006819 AL845493.1 non-coding upstream 652620 37178602 ~ 37178716 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05198747_05229460 PACS2 coding CI01000012 null 5198172 ~ 5229678 (+)