arl8a (arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230)


Basic Information

Item Value
gene id arl8a
gene name arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 827665 ~ 833455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218822
ACTGTGAAACCCCACCCAATGAGGAAGACCGACCCgcgagcagcagcagcagcagcagatccGGACCGAACCGCACCATGATCGCGCTCTTCAACAAGCTGCTGGACTGGTTCAAGGCGCTCTTCTGGAAGGAGGAGATGGAGCTGACGCTCGTCGGCCTGCAGTACTCCGGAAAAACCACCTTCGTCAACGTGATTGCGtcggGTCAGTTCAGCGAGGACATGATCCCGACGGTCGGCTTCAACATGCGCAAGATCACCAAGGGAAACGTCACCATCAAGGTCAGGAGGTCAAATAACACACCACTACAGAGACTCTT
>XM_043223751.1
TGACGTCAGCGGGCGCGCGTCCAGCAGGGGGCGCGCGGCGCCGCGAGTCCCGCATTGTTTGGATCAGCTGTGCGCGGGTGACTGTGAAACCCCACCCAATGAGGAAGACCGACCCgcgagcagcagcagcagcagcagatccGGACCGAACCGCACCATGATCGCGCTCTTCAACAAGCTGCTGGACTGGTTCAAGGCGCTCTTCTGGAAGGAGGAGATGGAGCTGACGCTCGTCGGCCTGCAGTACTCCGGAAAAACCACCTTCGTCAACGTGATTGCGtcggGTCAGTTCAGCGAGGACATGATCCCGACGGTCGGCTTCAACATGCGCAAGATCACCAAGGGAAACGTCACCATCAAGctgtggcgctGCTTCAGGAGCAGCGCCTTCAGGAGCATGTGGGAGAGATACTGTCGCGGGGTCAGTGCTATCGTGTACATGGTTGACGCGGCCGATCCGGAGAAGATCGAGGCGTCGAAGAACGAGCTGCACAACCTGCTCGACAAACCTCAGCTGCAGGGGATCCCGGTCCTGGTTTTGGGCAATAAGCGAGATCTTCCCGGAGCTCTGGACGAGAAGGAGCTCATCGAGAGAATGAACCTGTCTGCCATCCAGGACCGAGAGATCTGCTGCTACTCCATCTCCTGCAAGGAGAAGGACAACATCGATATCACACTACAGTGGCTGATCCAGCACTCTCGGACCCGACGGAGCTGAGGAGGCGGAGCCGGCATCTGATTGGAGCAACCGCATCATGTGATCAACTGCATTTTAGGCGCTCTTGATTTGGTTCTAAACAAACAAGCCTCCGCCCCTCCCTCTGTTCTTATAAACTAATCCACATCATTTACATCGTTTCAACgttgatttttacttttacttgaaTGTGCTTTTTTACGGTTCGTCTTGAAGTCACATGGCGCGCCGCGTGCTTGCTCGGAGACGGGACCGAACCGGAACCGGCGCTCGAAGCTCACGTGATTTTGGCTGTTCGCGCCGCCATCTTGTTTTTAGCGTTCCAGCGTCGCGAGAACATTCCACGTGCTCTCTGGTCGTTCACTGAGAGAATTCGTTAACGTACACTATTGTTTTGCGTTTAGCAAGATATTACTCGTTAGTATTATTAGCCTGTTAGCATGACCCAGTGCTAGCGtcgctgtttttttaaaagaacgaGACGTCACGTCGGCATCGAGGTCACATGGTTTGCGTTAATATTGTAGCATTACGAAATCTTTTTATCTGAAAGCACACGAATCATTTTGAAGAGTTTAACGCGTCCAAATGAAGGTTTTATACGTTTCTTTTGAGTCGCTGCGACTGCGGCCTTGTCGTCGACGTGGGTTGGTTGTCATGGCAACCATTCCAATCGagttattctttattttattttacattttttaggaCCGTCGGTCTGCGAGCGCATGCAGAGCATcatcagtgttttcttttcttttcgcCGGGACTCGAGATGAGGCGAACCCTGCGCGAATCTCCTGCTTATTCCAGTGTTTTTCGGGAGAGAAGATGATTTTTATCGCTTTATTTCGTTTACAGTTTTGTTCTCGTCACGCGTGCGGATGTCTCTGGCCTGAATCATAACGGTTTATGAACGCACCGGTAGATTATACATATGTAAATTGACatgttttggttgtttttggCATGTTTTTACTCATGTTTTTTCACAGTGTTTTTCAACTGGATTATGTAAATAGCAACTTAAACCAAATGAGATCTCCCTCCCGAGCGTCACGGTGTTTGTCTTAGTGTGATTAGCGTCCTACgatgataaaaaataatgataataataataataaagaagacCCCGCTCATATCACAGCAATCTGAACAaatggattgtgtgtgtgtgtgtgtgtgtgagagtgagagagagtgtgtgtgtgatggtgttTGTTGGCCGTCAAGTAGACtagaatatttactttataaatgCCGAAGGTTTACTCTGTTGATTTTTCGCAGCTGTTGATCACTTTATATTCACCCTAGTCTTGAGTTCATGGCAGCGAACGACTCAATGCAACAAAATGGCGGCCATGGACGCCGCTGCACGTGTTACGAAGTCGTGTTACACTTCACTTAGATGTTACGACACTGGTTACAGCGATAACCTTACTTACAAAAGGTGTTTTTACTACGATATTACTGTCGTTGAGAAGTGACGCTAACAGCTTTGTTGACGCTAGCGGGTATTTACGaagtaaataacataaaatagtATGATAAAGTTGATTTTCACAAAGTAGTTTGCAAAGTCAACCTATGAagtaatattcataattaacaGCAGCGCGGTTTTCACGCAGTTTGGTTGCGTGATCACGTTCAGAAACGCCTTTGACGTCGCTCTTGACGAATGGTTGAAGTTCACTTCAGATTTGAACGGAAGTCGTTCTCGTGAAGTTCTGATCGCAATTGACTTTGCTGCTTAACGTGGACTAGACGTCTCTTAGAAGTCGGTGTAACCAAATCAACTTTGTTGATTGTAACGACATCGTTTTACGAATTTATACTAATGaagtcattttctttattcGCTTGGTTGGTAAAGAGGATTCCAACTATCGCGAGACTTTGTGTGCAGTGCGGTCTGACGTCACTTTGTTGCGTTGCGTTACTTAATTGAACGCTGATCGCAGAACGTtagtttttctgcttttcttcaTGGACACGAGCTCCTCTGGGCTCTACTCGACTTCTGTACGCgtgttgattttattattatttttttatgtctaatTACATGTGGccataatgtttgttttgattttttttaaatcatttgtaacGGCGTCGCGCTCATTTGTTTGCTGGGGAGTCACGCGCTTTCCCCCCTTTGCATGAATTCATTATGGGATGGAGCCGGTTGCCATAGTTACTGTATAATCAGCGTGTGATTGGACCGGAGCTTGACGATGTTCTTTCCCCCTCTTTATATGGACAAGTAACTTTTTAAAGCAGTCACGTGACCGGTGTTTCTGTACCAGACTCGATCAGTTCAGTTCTTCATTTGGGATCTTTCTATTCTCTCGTACTCGCGGTGATAACTGTACATGTTGTTCTTGTTATTtacagattatttaaaaatgaaattaaatgatttcCCTCTCAGAA

Function

symbol description
arl8a Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane and lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8A (ADP ribosylation factor like GTPase 8A).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 8A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
TU218822 False 319 TUCP 0.56 2 831975 833375
XM_043223751.1 True 3139 mRNA 0.46 8 827665 833455

Neighbor

gene id symbol gene type direction distance location
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding downstream 32282 791234 ~ 795383 (-)
cdkn1a NA coding downstream 47025 776693 ~ 780640 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 52122 769663 ~ 775543 (-)
bysl bysl,LOC107569751 coding downstream 69106 753236 ~ 758559 (-)
ccnd3 LOC107656907,LOC107572366,LOC107723118 coding downstream 74830 748168 ~ 752835 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding upstream 21209 854664 ~ 856754 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding upstream 38492 871947 ~ 878948 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 59133 892588 ~ 895753 (-)
cry4 cry4 coding upstream 62773 896228 ~ 903773 (-)
dram2b dram2,dram2b,LOC107726524,LOC107750688,LOC107572549 coding upstream 80494 913949 ~ 918187 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding downstream 25715 799650 ~ 801950 (-)
G148127 med20,LOC107581150 non-coding downstream 67124 687125 ~ 760541 (-)
G148089 NA non-coding downstream 268791 482211 ~ 558874 (-)
G148091 NA non-coding downstream 346945 479495 ~ 480720 (-)
G148081 NA non-coding downstream 354119 472876 ~ 473546 (-)
G148088 NA non-coding upstream 17700 851155 ~ 870764 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 48472 881927 ~ 887759 (-)
G148175 NA non-coding upstream 50700 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 73038 906493 ~ 907529 (-)
G148195 NA non-coding upstream 134421 967876 ~ 968788 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 39454 783851 ~ 788211 (-)
G148119 NA other downstream 147768 674976 ~ 679897 (-)
G148116 NA other downstream 156245 667504 ~ 671420 (-)
tmem240b NA other downstream 234016 590027 ~ 593649 (-)
G148042 myhz2,LOC108417180,LOC106597527,LOC106596646,LOC107681327,LOC108261437 other downstream 395066 354912 ~ 432599 (-)
LOC122328005 NA other upstream 126235 959690 ~ 960903 (-)
G148573 NA other upstream 628418 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 746835 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 749560 1583015 ~ 1614538 (-)
G148574 NA other upstream 810255 1643710 ~ 1654340 (-)

Expression


Co-expression Network