G148088


Basic Information

Item Value
gene id G148088
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 851155 ~ 870764 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218833
TGTAGCTAATTAAAATTTCATCTTTATTACAACCACATGTACATCATATCCCaagaaaattatttctaaaagtgGAAACGAGCAAAATCCAATGAGAGAGGCAGAGTTTTTCTGTTAATCCGTACGGGAAGATGTTCCATCCGTCCACATCCATTATTCACAGCGTTTGAGTCGCGGCGAAAATGACGTGATTTCACCTCAGAAACGGCGGCGAGAGAGCGAGACGTGTCGCAGAGTCACAGTTGTGAGGAAAAATTGTAAACACTCCAGTGCTCGTGCACCAAAAATAGTGCAGGTGGGAAAAATCCTGATTTTCTGCTCAGAGAAGACAAAAGAGATCCGCAAACATCCCACGCTGACACAGGTGACTCCAAAAATACTTATGCATATTCTGCTTTGGAAAAGAATTAGGTCTCGTTCGCGAAACGTGAGCAAGAACGAATCCGTGTGAATCATTCAGAACGCCATCGTTCGGCTCGTTCGGCTCAGCAGCTCGCGCAGAATCCGTTCCGCGAGGCTTTCTGTAAAGTTGAAACCTTGGTGTCTGCGGAAAGGTGTGCTGAAAATATCTGATGAATTTGCACTTCTCTACGAACTGTTGTACTTCCGTTAAAACCACTTAGAATTCTTCTTCGAGTCTTTATAAAagttctttgtttctttttgtgacATCAATTGTGAAGAGCACGagaaaaatagctttaaaaatacTCTACAGAACTACAGTTATAGTGCAAGAACCCGCACACTTcacaacacacactcatgtttCCGCTGCCTGATCTCCAGCATAACCTTGAGCTCCCAACCGCCGGCCTGCGTATCCGACTCCCCATCCGTCCATAGATTATCCGATATTATTCCCAGAGAATCAGATTGATGATTGAAAGGAGGAGGGGCTGTGCTAACGCCACAAATTAGCTAGAGGAAGACAGTCGGAAAGGGAATTCTTTAAATTTTGTGCAAAAGTGATGCAATTCGGATGTCGTTGACAGGCTAGTTGCAAATCATGTCGACGAAATTAAATCTCACGGTTAGCACCACCTTTAAAATGATCCGTAACGTAAACTTTTCTTGGCACCAAATGAAATTCGTTTTGTCTGGCGTCCGTATCTGTTGTATTGCTTCATGCGGTCGAATCAAACTGCAGTGAATTCACTCCCTAATAAAACATCTCTTCACAACACAATGCAAAACAAGATACtgcaaatataacatttaaaaatcaatgtacTACGGTGTTCGGAATCGTCTGTATCTACAGTAAACCTCAATGTCAGGAGGTAGCTTTGTGTAGTGCGGccagtccaacacacacaaacacacacacactcacacacagacacactcacacacaatcacacactcacacacatacacactcacgcgcacacacatacacactcacacacactcatacacacactcacacacacacacactcacacacactcatacacacacacacacttacacgcacacacactcacattcacacacacacacacactcacacacacacacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU218833 True 1548 lncRNA 0.43 3 851155 870764

Neighbor

gene id symbol gene type direction distance location
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding downstream 55772 791234 ~ 795383 (-)
cdkn1a NA coding downstream 70515 776693 ~ 780640 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 75612 769663 ~ 775543 (-)
bysl bysl,LOC107569751 coding downstream 92596 753236 ~ 758559 (-)
ccnd3 LOC107656907,LOC107572366,LOC107723118 coding downstream 98320 748168 ~ 752835 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding upstream 1183 871947 ~ 878948 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 21824 892588 ~ 895753 (-)
cry4 cry4 coding upstream 25464 896228 ~ 903773 (-)
dram2b dram2,dram2b,LOC107726524,LOC107750688,LOC107572549 coding upstream 43185 913949 ~ 918187 (-)
cept1b cept1,cept1b,LOC107572554,LOC103025726,LOC108413012 coding upstream 47654 918418 ~ 925898 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding downstream 49205 799650 ~ 801950 (-)
G148127 med20,LOC107581150 non-coding downstream 90614 687125 ~ 760541 (-)
G148089 NA non-coding downstream 292281 482211 ~ 558874 (-)
G148091 NA non-coding downstream 370435 479495 ~ 480720 (-)
G148081 NA non-coding downstream 377609 472876 ~ 473546 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 11163 881927 ~ 887759 (-)
G148175 NA non-coding upstream 13391 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 35729 906493 ~ 907529 (-)
G148195 NA non-coding upstream 97112 967876 ~ 968788 (-)
G148198 NA non-coding upstream 100184 970948 ~ 972143 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other downstream 17700 827665 ~ 833455 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 62944 783851 ~ 788211 (-)
G148119 NA other downstream 171258 674976 ~ 679897 (-)
G148116 NA other downstream 179735 667504 ~ 671420 (-)
tmem240b NA other downstream 257506 590027 ~ 593649 (-)
LOC122328005 NA other upstream 88926 959690 ~ 960903 (-)
G148573 NA other upstream 591109 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 709526 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 712251 1583015 ~ 1614538 (-)
G148574 NA other upstream 772946 1643710 ~ 1654340 (-)

Expression


Co-expression Network