srsf3b (srsf3,srsf3b,LOC107569752,LOC107690536)


Basic Information

Item Value
gene id srsf3b
gene name srsf3,srsf3b,LOC107569752,LOC107690536
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 783851 ~ 788211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218899
GAGCGCGTCCGCATTTCCGCGCTGCGCCATTTCGGAGCGGATCAGATCCAGGAATCGGGACACACGCGATCAGAAACACGCGAAACTCACGATTGAGCCATGCATCGTGACTGCCCTCTGGACTGTAAGGTGTACGTTGGGAATCTGGGAAATAATGGGAACAAATCCGAGCTGGAGCGGGCGTTTGGCTACTACGGACCCCTGAGGAGCGTCTGGGTGGCCAGGAATCCTCCCGGTTTTGCATTCGTTGAGTTCGAGGACCCTCGCGATGCCACAGACGCCGTCAGAGAGCTGGACGGACGGACCCTCTGCGGTTGCCGAGTGAGGGTGGAGTTGTCCAATGGCGAGAAGCGCTCTCGTAACCGGGGTCCGCCTCCGTCCTGGAGCCGACGCCCACGCGATGACTACCGAAGGCGCAGCCCGGCCCCCAGGCGCAGAGTCACCACCATGCCTCTCCTCACCACCCTCTGAGTCAGTCTACTAGTCCTCTTTCAGCATCATGTGACCAGCGTGCCCCAATCAGCTGGCTGGGTTGGTGTCACATGACCCAGGCGTTGCCAGTCATCAGGTCGCACCAGCCCATTGGTTCCTGAGCATGCCGTTGtcagctcctcctcctccaacCTTAACACCCAATCGGCAGCGGCCCACTTCACATTCCTGACCAATCAGCGTTTTACGCTCCCCAATGTCTACACTACCAACCACCAGCAACAGCCTTCGGCTAACCAATAAAAGCAGGAAATATCCACTACATCCAGCCCCCATCCGCAAGCCAGCTAATCAGCTCGCAGCATCTGGCCTGCACTTTCCCGCCAATTCTGCTCCCCGGCCGCCAGCCGTCCTCCCCTTCGCCTTTTCTAGCTTGTTGAAAACCGAAAAGACTAGTAAGTTTTTCCTGCTTCATACAGTTTAATGCTGAATACAGATGTAAGATGAGGAGAAATCTCCTGTTGAGTTGAAACAAACAGGGTTGGTATGAGATCTGGACAGACGTTGTTAAGCTTAGGTAAGCAGACTGATGGGGAGCCCAAACGGAGGTTCAGGTTACAGAAGAAGCGTGGGCTTTGAGAGCTGCTCTTGCTTTCTTTCACTGTCTTCATTCTGTGGGGTTGTTTGCAGTGCGTTTCTGTTGAGTTTTCTCCTGCTAGTGCACTACTTTTGTAGCTCTCTGTACTCGAGCGTAACGCTCTTAGCGAGGGAGGTTCTCCGAAGCCTCATGTTGCGAGGTCTCCACTCCACCCCTGTATCAGGGCGGTGACGAGTGCGTTTGACCGTTAGCAGGCTGGAGTTGCAGGGCTATTGAGGTGCGTCCGTGTGTCGACTGCGCGCTCACTCGCTTtgcctctcttctcttcttcagatCGCCCAGGAGGAGGAGCCTGAGTCGTAGTCGCAGCAGATCTCTTTCCAGAGAGCGCCGGAGGGAGAGATCGCTGTCTCGAGACAGGAACCACAGGCTTTCGCGATCTTTCTCCCGATCAAGGAGTCGTTCCAGATCGAATGACCGGAAATGAACGTTGGCGCTGAGAAGAACATTGTGACGGAAATCTCGGCACAGATCAAACATGTTGAAAAAGACTTTGAGTCccccatattttttttttatttttattaacattattttagcgGTTCTGTTTTCTTCTGTAGCTGCGGTTGTGCGTGTTTGCAGTTTTAATGCGACGGCATTCCATCTCACacttttaagactttttatgttttttggcgGTGAATGTGATAGGTTCTGCTGCGCTGAGCTCGACCGTGTTTGTTTTCGGTGCGATCAGTGGGGGGAGATGTAACGGCACTATGACGGCAGCAGGGGGGGGAACGGAGAACAGCTTtcatgttgggttttttttttttttgtttctcgtAGTGTTTGTACTGTTTATAATGTTGATCTGAATTAAAAC
>TU218900
GAGCGCGTCCGCATTTCCGCGCTGCGCCATTTCGGAGCGGATCAGATCCAGGAATCGGGACACACGCGATCAGAAACACGCGAAACTCACGATTGAGCCATGCATCGTGACTGCCCTCTGGACTGTAAGGTGTACGTTGGGAATCTGGGAAATAATGGGAACAAATCCGAGCTGGAGCGGGCGTTTGGCTACTACGGACCCCTGAGGAGCGTCTGGGTGGCCAGGAATCCTCCCGGTTTTGCATTCGTTGAGTTCGAGGACCCTCGCGATGCCACAGACGCCGTCAGAGAGCTGGACGGACGGACCCTCTGCGGTTGCCGAGTGAGGGTGGAGTTGTCCAATGGCGAGAAGCGCTCTCGTAACCGGGGTCCGCCTCCGTCCTGGAGCCGACGCCCACGCGATGACTACCGAAGGCGCAGCCCGGCCCCCAGGCGCAGGTAAACCTGTTTTCCCGCTCACCTCTTTCTCTGTAGGTTGTGTTCCAGAGGACACTAATCTGATTCTGCCCCTTCCGCCCGTCCTGGAGGCTCCGCTGGTGCCGGGTGTCCCGGTTCTGACGAGCATCTGCTGGGGATCTCTTGCTCCTCCATCTTCATTGTCATTGATAACCATTAAACAATGATTGACTGGGCTTCTCAAATTCTGATAGTGTTACTATGCAAATCAGTAAGTTGTTTATTGGGTTAATTTGATGACACAATGCCGATGTTACGTTTCACTCCAAAATGAGATGCTTTTcgcttgtttttttgcattgagaCTTTGTGCGCCAAGTCACGTCGCTGTGTCCATTATCCCACGTTCAATTTTTGCGTTTTTATGAATTGGTGGCTCACTCATTGTTTCATGCTCCTGCTCGTACAGTAGCTCCACTTGCCTGTGAGATTGGGTTAAATTCTGCAAATGTTAATTAGaccattaataaacaaattgcaAGCAAACTTTTCTAATGTTAAGTTGCGAAGGATAATGTACTTAAGTGGCGGTAATGGGCATTACAGCGGCGATTGAGGTAACGCTACATATTATGATAAAAGGTCCCAAAGTCTCAGTGcagaaaacattgttttcaaaataggctttgtttctctttaatttttttttttttttttttttttttttttttggattgaaaCTTGACTTGAGGCTTTGCTAAATTGTGAATTGGCCGTCAAAGCCCAGTCGCTAGTGTTCAGTAATCTGCTCGGCTCTAGTAATGGTTGGAATATGCAATCTTTTGTTGACTTAACTTTTACATGaaggttgtttttattttcttatctatattaataaaaatgaacccCGTTGCAGAGTCACCACCATGCCTCTCCTCACCACCCTCTGAGTCAGTCTACTAGTCCTCTTTCAGCATCATGTGACCAGCGTGCCCCAATCAGCTGGCTGGGTTGGTGTCACATGACCCAGGCGTTGCCAGTCATCAGGTCGCACCAGCCCATTGGTTCCTGAGCATGCCGTTGtcagctcctcctcctccaacCTTAACACCCAATCGGCAGCGGCCCACTTCACATTCCTGACCAATCAGCGTTTTACGCTCCCCAATGTCTACACTACCAACCACCAGCAACAGCCTTCGGCTAACCAATAAAAGCAGGAAATATCCACTACATCCAGCCCCCATCCGCAAGCCAGCTAATCAGCTCGCAGCATCTGGCCTGCACTTTCCCGCCAATTCTGCTCCCCGGCCGCCAGCCGTCCTCCCCTTCGCCTTTTCTAGCTTGTTGAAAACCGAAAAGACTAGTAAGTTTTTCCTGCTTCATACAGTTTAATGCTGAATACAGATGTAAGATGAGGAGAAATCTCCTGTTGAGTTGAAACAAACAGGGTTGGTATGAGATCTGGACAGACGTTGTTAAGCTTAGGTAAGCAGACTGATGGGGAGCCCAAACGGAGGTTCAGGTTACAGAAGAAGCGTGGGCTTTGAGAGCTGCTCTTGCTTTCTTTCACTGTCTTCATTCTGTGGGGTTGTTTGCAGTGCGTTTCTGTTGAGTTTTCTCCTGCTAGTGCACTACTTTTGTAGCTCTCTGTACTCGAGCGTAACGCTCTTAGCGAGGGAGGTTCTCCGAAGCCTCATGTTGCGAGGTCTCCACTCCACCCCTGTATCAGGGCGGTGACGAGTGCGTTTGACCGTTAGCAGGCTGGAGTTGCAGGGCTATTGAGGTGCGTCCGTGTGTCGACTGCGCGCTCACTCGCTTtgcctctcttctcttcttcagatCGCCCAGGAGGAGGAGCCTGAGTCGTAGTCGCAGCAGATCTCTTTCCAGAGAGCGCCGGAGGGAGAGATCGCTGTCTCGAGACAGGAACCACAGGCTTTCGCGATCTTTCTCCCGATCAAGGAGTCGTTCCAGATCGAATGACCGGAAATGAACGTTGGCGCTGAGAAGAACATTGTGACGGAAATCTCGGCACAGATCAAACATGTTGAAAAAGACTTTGAGTCccccatattttttttttatttttattaacattattttagcgGTTCTGTTTTCTTCTGTAGCTGCGGTTGTGCGTGTTTGCAGTTTTAATGCGACGGCATTCCATCTCACacttttaagactttttatgttttttggcgGTGAATGTGATAGGTTCTGCTGCGCTGAGCTCGACCGTGTTTGTTTTCGGTGCGATCAGTGGGGGGAGATGTAACGGCACTATGACGGCAGCAGGGGGGGGAACGGAGAACAGCTTtcatgttgggttttttttttttttgtttctcgtAGTGTTTGTACTGTTTATAATGTTGATCTGAATTAAAAC
>TU218901
GAGCGCGTCCGCATTTCCGCGCTGCGCCATTTCGGAGCGGATCAGATCCAGGAATCGGGACACACGCGATCAGAAACACGCGAAACTCACGATTGAGCCATGCATCGTGACTGCCCTCTGGACTGTAAGGTGTACGTTGGGAATCTGGGAAATAATGGGAACAAATCCGAGCTGGAGCGGGCGTTTGGCTACTACGGACCCCTGAGGAGCGTCTGGGTGGCCAGGAATCCTCCCGGTTTTGCATTCGTTGAGTTCGAGGACCCTCGCGATGCCACAGACGCCGTCAGAGAGCTGGACGGACGGACCCTCTGCGGTTGCCGAGTGAGGGTGGAGTTGTCCAATGGCGAGAAGCGCTCTCGTAACCGGGGTCCGCCTCCGTCCTGGAGCCGACGCCCACGCGATGACTACCGAAGGCGCAGCCCGGCCCCCAGGCGCAGAGTCACCACCATGCCTCTCCTCACCACCCTCTGAGTCAGTCTACTAGTCCTCTTTCAGCATCATGTGACCAGCGTGCCCCAATCAGCTGGCTGGGTTGGTGTCACATGACCCAGGCGTTGCCAGTCATCAGGTCGCACCAGCCCATTGGTTCCTGAGCATGCCGTTGtcagctcctcctcctccaacCTTAACACCCAATCGGCAGCGGCCCACTTCACATTCCTGACCAATCAGCGTTTTACGCTCCCCAATGTCTACACTACCAACCACCAGCAACAGCCTTCGGCTAACCAATAAAAGCAGGAAATATCCACTACATCCAGCCCCCATCCGCAAGCCAGCTAATCAGCTCGCAGCATCTGGCCTGCACTTTCCCGCCAATTCTGCTCCCCGGCCGCCAGCCGTCCTCCCCTTCGCCTTTTCTAGCTTGTTGAAAACCGAAAAGACTAatCGCCCAGGAGGAGGAGCCTGAGTCGTAGTCGCAGCAGATCTCTTTCCAGAGAGCGCCGGAGGGAGAGATCGCTGTCTCGAGACAGGAACCACAGGCTTTCGCGATCTTTCTCCCGATCAAGGAGTCGTTCCAGATCGAATGACCGGAAATGAACGTTGGCGCTGAGAAGAACATTGTGACGGAAATCTCGGCACAGATCAAACATGTTGAAAAAGACTTTGAGTCccccatattttttttttatttttattaacattattttagcgGTTCTGTTTTCTTCTGTAGCTGCGGTTGTGCGTGTTTGCAGTTTTAATGCGACGGCATTCCATCTCACacttttaagactttttatgttttttggcgGTGAATGTGATAGGTTCTGCTGCGCTGAGCTCGACCGTGTTTGTTTTCGGTGCGATCAGTGGGGGGAGATGTAACGGCACTATGACGGCAGCAGGGGGGGGAACGGAGAACAGCTTtcatgttgggttttttttttttttgtttctcgtAGTGTTTGTACTGTTTATAATGTTGATCTGAATTAAAAC
>XM_043223728.1
TTACAGGCGCCGGCTCCGAAGCCCCGCCCTCTAGCGTGCGTCGAGACGTTCATTACGTGAGCGCGTCCGCATTTCCGCGCTGCGCCATTTCGGAGCGGATCAGATCCAGGAATCGGGACACACGCGATCAGAAACACGCGAAACTCACGATTGAGCCATGCATCGTGACTGCCCTCTGGACTGTAAGGTGTACGTTGGGAATCTGGGAAATAATGGGAACAAATCCGAGCTGGAGCGGGCGTTTGGCTACTACGGACCCCTGAGGAGCGTCTGGGTGGCCAGGAATCCTCCCGGTTTTGCATTCGTTGAGTTCGAGGACCCTCGCGATGCCACAGACGCCGTCAGAGAGCTGGACGGACGGACCCTCTGCGGTTGCCGAGTGAGGGTGGAGTTGTCCAATGGCGAGAAGCGCTCTCGTAACCGGGGTCCGCCTCCGTCCTGGAGCCGACGCCCACGCGATGACTACCGAAGGCGCAGCCCGGCCCCCAGGCGCAGatCGCCCAGGAGGAGGAGCCTGAGTCGTAGTCGCAGCAGATCTCTTTCCAGAGAGCGCCGGAGGGAGAGATCGCTGTCTCGAGACAGGAACCACAGGCTTTCGCGATCTTTCTCCCGATCAAGGAGTCGTTCCAGATCGAATGACCGGAAATGAACGTTGGCGCTGAGAAGAACATTGTGACGGAAATCTCGGCACAGATCAAACATGTTGAAAAAGACTTTGAGTCccccatattttttttttatttttattaacattattttagcgGTTCTGTTTTCTTCTGTAGCTGCGGTTGTGCGTGTTTGCAGTTTTAATGCGACGGCATTCCATCTCACacttttaagactttttatgttttttggcgGTGAATGTGATAGGTTCTGCTGCGCTGAGCTCGACCGTGTTTGTTTTCGGTGCGATCAGTGGGGGGAGATGTAACGGCACTATGACGGCAGCAGGGGGGGGAACGGAGAACAGCTTtcatgttgggttttttttttttttgtttctcgtAGTGTTTGTACTGTTTATAATGTTGATCTGAATTAAAACTCATGACAAAAA

Function

symbol description
srsf3b Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF3 (serine and arginine rich splicing factor 3).
srsf3 Enables RNA binding activity. Involved in mRNA export from nucleus and regulation of mRNA splicing, via spliceosome. Located in nuclear speck. Biomarker of bipolar disorder and ovary epithelial cancer.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218899 False 1916 TUCP 0.53 6 783863 788153
TU218900 True 2790 TUCP 0.49 5 783863 788153
TU218901 False 1440 TUCP 0.54 7 783863 788153
XM_043223728.1 False 1060 mRNA 0.53 6 783851 788211

Neighbor

gene id symbol gene type direction distance location
cdkn1a NA coding downstream 3211 776693 ~ 780640 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 8308 769663 ~ 775543 (-)
bysl bysl,LOC107569751 coding downstream 25292 753236 ~ 758559 (-)
ccnd3 LOC107656907,LOC107572366,LOC107723118 coding downstream 31016 748168 ~ 752835 (-)
dstyk dstyk coding downstream 45102 722123 ~ 738749 (-)
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding upstream 3023 791234 ~ 795383 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding upstream 66453 854664 ~ 856754 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding upstream 83736 871947 ~ 878948 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 104377 892588 ~ 895753 (-)
cry4 cry4 coding upstream 108017 896228 ~ 903773 (-)
G148127 med20,LOC107581150 non-coding downstream 23310 687125 ~ 760541 (-)
G148089 NA non-coding downstream 224977 482211 ~ 558874 (-)
G148091 NA non-coding downstream 303131 479495 ~ 480720 (-)
G148081 NA non-coding downstream 310305 472876 ~ 473546 (-)
G148099 NA non-coding downstream 330051 452244 ~ 453800 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding upstream 11439 799650 ~ 801950 (-)
G148088 NA non-coding upstream 62944 851155 ~ 870764 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 93716 881927 ~ 887759 (-)
G148175 NA non-coding upstream 95944 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 118282 906493 ~ 907529 (-)
G148119 NA other downstream 103954 674976 ~ 679897 (-)
G148116 NA other downstream 112431 667504 ~ 671420 (-)
tmem240b NA other downstream 190202 590027 ~ 593649 (-)
G148042 myhz2,LOC108417180,LOC106597527,LOC106596646,LOC107681327,LOC108261437 other downstream 351252 354912 ~ 432599 (-)
G148043 wu:fd14a01,myhz2,LOC107575389,LOC107681327,LOC108261508,LOC106593644,LOC107378336,LOC103152029,LOC106915643,LOC108443907,LOC106938366,LOC108417180,LOC107737926,LOC107083053,LOC108262146,LOC106597527,LOC108261437,LOC106598139 other downstream 390144 251814 ~ 393707 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other upstream 39454 827665 ~ 833455 (-)
LOC122328005 NA other upstream 171479 959690 ~ 960903 (-)
G148573 NA other upstream 673662 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 792079 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 794804 1583015 ~ 1614538 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020670 srsf3b coding NC_007133.7 CM002906.2 613265 ~ 622967 (-)
rainbow trout (Oncorhynchus mykiss) sfrs3 sfrs3 misc NC_048571.1 CM023225.2 58707572 ~ 58713630 (-)