G148127 (med20,LOC107581150)


Basic Information

Item Value
gene id G148127
gene name med20,LOC107581150
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 687125 ~ 760541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218907
TGCCCCTGGCGCTGGAGCTCATGGCCACGGTGCCGATCTTCACCAGGAAGTCGCAGTAGCGGTAGCGCGTGCCGCGAGACTCCACCTTGTGTCCCTTGGCGTTCTGGAAGTGACTCTTGAGTTTGACCATCAGGACGTCGAAGTTGGCGTCGGCGGTGAGGCCCGGGCCGCCCTCGAACAGAGCCATGCAGCTCAGCGGCGTCTCCGAGTTGTGCATCACATACAGCAGCTTCGTCGGCTggcctgcaacacacacacatacacatacagacacacacaacgCTGTTTCCACGGCAACCGACTTTTTACACGGAGATCACGTTTTGAGATATTTACTGCAGGAAATTCTTCGATCTTTGCTTAGTATCCTAAAGATGTTCGGCAGGCAGATGGCGTCTCACCGGTGGAGTTCCCCGTGGCGTGGTACGTCTCACAGTCCACCCAGAAGTTACCCTGTTTAACGGCTCCCAGCTGCTCCAGCTTCTTATGAAGCATGTCCACGGTCTGCTGCACGCTCTTCCCCTCCGCCACCGGCACctgacacacactgacacacacacacacacccacagacacacacacacacacacacagagacatacagacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
med20 Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED20 (mediator complex subunit 20).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218907 True 735 lncRNA 0.55 3 687125 760541

Neighbor

gene id symbol gene type direction distance location
nbl1 nbl1,LOC107573770,LOC107719025,LOC107656914,LOC107690543 coding downstream 25952 650321 ~ 661173 (-)
LOC122328004 tmem88b,LOC107574126,LOC107690568,LOC107719046 coding downstream 42329 641855 ~ 644796 (-)
LOC122327949 NA coding downstream 50973 631746 ~ 636152 (-)
wu:fj30f06 LOC107690564,LOC107575580,LOC107719048,LOC107564176 coding downstream 64898 620289 ~ 622227 (-)
LOC122327955 ccnl2 coding downstream 68436 614318 ~ 618689 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding upstream 9122 769663 ~ 775543 (-)
cdkn1a NA coding upstream 16152 776693 ~ 780640 (-)
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding upstream 30693 791234 ~ 795383 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding upstream 94123 854664 ~ 856754 (-)
rbbp5 rbbp5,LOC106583489,LOC106565113 coding upstream 111406 871947 ~ 878948 (-)
G148089 NA non-coding downstream 128251 482211 ~ 558874 (-)
G148091 NA non-coding downstream 206405 479495 ~ 480720 (-)
G148081 NA non-coding downstream 213579 472876 ~ 473546 (-)
G148099 NA non-coding downstream 233325 452244 ~ 453800 (-)
G148095 NA non-coding downstream 244457 441728 ~ 442668 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding upstream 39109 799650 ~ 801950 (-)
G148088 NA non-coding upstream 90614 851155 ~ 870764 (-)
G148172 LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112 non-coding upstream 121386 881927 ~ 887759 (-)
G148175 NA non-coding upstream 123614 884155 ~ 884949 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 145952 906493 ~ 907529 (-)
G148119 NA other downstream 7228 674976 ~ 679897 (-)
G148116 NA other downstream 15705 667504 ~ 671420 (-)
tmem240b NA other downstream 93476 590027 ~ 593649 (-)
G148042 myhz2,LOC108417180,LOC106597527,LOC106596646,LOC107681327,LOC108261437 other downstream 254526 354912 ~ 432599 (-)
G148043 wu:fd14a01,myhz2,LOC107575389,LOC107681327,LOC108261508,LOC106593644,LOC107378336,LOC103152029,LOC106915643,LOC108443907,LOC106938366,LOC108417180,LOC107737926,LOC107083053,LOC108262146,LOC106597527,LOC108261437,LOC106598139 other downstream 293418 251814 ~ 393707 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other upstream 23310 783851 ~ 788211 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other upstream 67124 827665 ~ 833455 (-)
LOC122328005 NA other upstream 199149 959690 ~ 960903 (-)
G148573 NA other upstream 701332 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 819749 1580290 ~ 1625907 (-)

Expression


Co-expression Network