G148172 (LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112)


Basic Information

Item Value
gene id G148172
gene name LOC107570678,LOC107698304,LOC108413010,LOC105016818,LOC106565112
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 881927 ~ 887759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU218962
CCTTCATGCCCTCCTCCCAGCTGATCCACAGATCTCCTCGGGTCAGGAAGCAGGCCACGGCGTGCCGCGCCAGGTGATGGATCCAGCCCTCCTGCCTCAGCTGGGTCATGATGGCGTCGATCCAAGGGAAGCCCGTCTTGGCCTCGGCCCACTTGGCCAGAGCCTCGGGGTTCCTGTCCCACGGGATGCGGATGCAGATGGGGTTCCCCTCCATCCGGTCGAAGCGGGGGTTGTTGCTGGCCGCCGTGTAGAAGAACTCCCTCCACAAGAGCTTGTCGTAGAGAGAGATCGACGGGCTGCCGCTCTTCTTCACCTGAGTTCATAAAGTTAATTAGGATGATTAAAGAAAACTGTGCTTTGTTTTCACAATATAAGAAAAGAGCTTTTTAAACTTCAACTATGATCTATACATCATGATGTAAAGAAACTGCGTTTGAAGTGTATTGATTatgatttacatatttaataataaaatatgtaataacatgcaatatttttaacattatatattagaATTGGATCACATTTAAGATGAATTGGATGCTATTCGTGTAGGTATTAAAGAACACGTTTAACTGGAGTGCACTGATCAGCTGGGAGGACCGGGCCGTACCTTCTTGTAGAGTTCAGTGAGTTTGTAGAAGAACAGACGGCAGGACAGACAGCCGAAGCGCAGGTACGGACTCAGACCCAGAGGACTGGCCAGAAGAGGACTGGAGCTCAGCTTGGGACGCTCAAAGTTCTCCTGCCACGCCTGGacaccagaaacacacacctcacacacggCTGATCAcgtgacctgtgtgtgtgtgtgtgtctgtgtctctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgacctcCAGCGGTTGACCCCTCGGTTGGAGGCCCCGGCGAACCAGGGGTCGAGGAAGTAAACGCATCGCAGCGTCTGGGAGCCCCGGGCCGCCTCCAGGAGAGACGGGTTATCATGAAGACGCAGACCCTTCCTGAACCAGTGGATGGAGTTGATCGGCATgatgctgcacacacacacacacacacacacacacacacacacacacacacagacacagagacagacacagagacagacacagagacagacacagagacagacacacagacagacacac

Function

NR:

description
PREDICTED: cryptochrome-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218962 True 1156 lncRNA 0.51 3 881927 887759

Neighbor

gene id symbol gene type direction distance location
rbbp5 rbbp5,LOC106583489,LOC106565113 coding downstream 2979 871947 ~ 878948 (-)
btg2 LOC107671524,LOC107698306,LOC107750684,LOC107575492,LOC107576648 coding downstream 25173 854664 ~ 856754 (-)
apobec2a apobec2a,LOC107572363,LOC107723096,LOC107656899,LOC107750676,LOC107698292 coding downstream 86544 791234 ~ 795383 (-)
cdkn1a NA coding downstream 101287 776693 ~ 780640 (-)
tmcc2 tmcc2,LOC107656904,LOC107569750,LOC107690538,LOC107572364 coding downstream 106384 769663 ~ 775543 (-)
zgc:153675 zgc:153675,LOC107570677,LOC107698303,LOC107723087,LOC107750711,LOC105900578,LOC102228910,LOC102797113,LOC105016822 coding upstream 4829 892588 ~ 895753 (-)
cry4 cry4 coding upstream 8469 896228 ~ 903773 (-)
dram2b dram2,dram2b,LOC107726524,LOC107750688,LOC107572549 coding upstream 26190 913949 ~ 918187 (-)
cept1b cept1,cept1b,LOC107572554,LOC103025726,LOC108413012 coding upstream 30659 918418 ~ 925898 (-)
kctd20 kctd20,LOC107572550,LOC107667635,LOC107726526 coding upstream 48672 936431 ~ 941022 (-)
G148088 NA non-coding downstream 11163 851155 ~ 870764 (-)
G148154 elf3,LOC107723034,LOC107656900,LOC107572362,LOC107569764,LOC107698310 non-coding downstream 79977 799650 ~ 801950 (-)
G148127 med20,LOC107581150 non-coding downstream 121386 687125 ~ 760541 (-)
G148089 NA non-coding downstream 323053 482211 ~ 558874 (-)
G148091 NA non-coding downstream 401207 479495 ~ 480720 (-)
G148180 LOC107698300,LOC107570675,LOC107572545,LOC107667626 non-coding upstream 18734 906493 ~ 907529 (-)
G148195 NA non-coding upstream 80117 967876 ~ 968788 (-)
G148198 NA non-coding upstream 83189 970948 ~ 972143 (-)
LOC122328046 NA non-coding upstream 84798 972557 ~ 973444 (-)
G148477 NA non-coding upstream 130772 1018531 ~ 1019039 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other downstream 48472 827665 ~ 833455 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 93716 783851 ~ 788211 (-)
G148119 NA other downstream 202030 674976 ~ 679897 (-)
G148116 NA other downstream 210507 667504 ~ 671420 (-)
tmem240b NA other downstream 288278 590027 ~ 593649 (-)
LOC122328005 NA other upstream 71931 959690 ~ 960903 (-)
G148573 NA other upstream 574114 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 692531 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 695256 1583015 ~ 1614538 (-)
G148574 NA other upstream 755951 1643710 ~ 1654340 (-)

Expression


Co-expression Network