G13330


Basic Information

Item Value
gene id G13330
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1043661 ~ 1045223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU14847
GATAGATAGATAGATAGATAGATAGATAGACACAGACATACAGAATGACAGAATGATAGAACGATAGATAGAACGATAGATAGATAGATACAGAATGATAGATAGCATGAAAGAACAATAGATGGGTGGGTGGATGGATGGATGGATGGATAGAATAATAGAACGATAGATACATGGAATGACAGATAAAACGATAGAACGATAGATAGAATAAAAGATAGGATGATAGAACGATGGATGGATGGATGGAACGATAGATAGATAGATAGATAGATAGATGGATGGATGGATGGATGGATGGATTTTGAATCCTGGTAATTAAATAATCTCATAGCAACCATCCAGAACACCCTGGCAACCGTATAGCAACACGCTAAAAAACTTTCCGAATGTGAAAAACTGACATTGAAGAAGAAATTAAAACAAACTAAAGTGTCACTATCATGACGAATGGTAGCAATTTTAACCAAAAGACTATTGAGCTTCCCATTCAGACACTCCAATAAATTTCTAAAATGCACGACAAAAAAAATTCCCAAATCATAAATCATGACTAACAAATTACACGCCTACAGTAACAGAGAACTGGGGACAAAAAAAAAAGTGCGTTTTCAGAGAAGAGGCGGTCCGTGGGCTCAAAGCGCTCTTGAGGGTCATTGGGTCTCATTGCAGCTCTGATGGGAGTCGTCCGGGCCAAAATGAGGGCCGGCGTTCATTTGACTGTGATCTGCAACAGGATCCGTTGGCTCCTAATGACTCCCTCTGGCAGCGTAATGGCAGGTATTAAAGCGCTTATCCCAGCAAGGACCTCAGCCTCCCAGGCTTAGCCGCACATGGCTCCACTCAAGCAAACCCAGCCATTGACGGACTAACTACAGGCCTCCACGGTGGCCATCCTGGCTCTCGGTGAGGCAGCTGCACATCTTTAAACAGTGCGCCTTGGAGGGGAAAGTCAAGCGAGCAGACTGAAGGGCAGGGAGACAGATGTGTGCCCCCTGTGAGAGACCTCTCCAAACAGTGAGGTGAAAAATGACTGGGGAAGGAGATGAGCACACTGAAGGAAGGATTCTGGGATTCCGGGGTGGAGCAGATAGATGGATCTGCATCCGTTTGCAATTTATATGCTGATTTGATCAGCTAGGAGTTGAACCAGGTTCCTTTTTGACCTCATGAAAGCCTCAAATTTACTGCTACTTGTAATAACATTGAAAGCATGCCTGAGAAAATGAATACCATGAAGGTTCAAGAGGTTTTTTAAACATTTAAAGACGACATGAAATGGCACTCGCAGCACATTTAACTATTTATATTTATTGGAAATGATGTAAAGCAGGACTATCAGAGTATGATGTTATTGGTTGTTTCTAGAATTTTTTATTTTCATTTTATTTTTTTTATTTTAGTTTCAAAAATAAATCAGATATGAATTATCCATCCATATTATTCCAAAAAAATATAAAAAATAAAATTTTATATATATATATATATATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU14847 True 1491 lncRNA 0.30 2 1043661 1045223

Neighbor

gene id symbol gene type direction distance location
CI01000001_01033836_01034518 NA coding downstream 8986 1033336 ~ 1034920 (-)
CI01000001_01030701_01030988 NA coding downstream 12497 1030254 ~ 1031164 (-)
CI01000001_00925612_00928679 NA coding downstream 114712 925440 ~ 928949 (-)
CI01000001_00872245_00878013 ZFP64 coding downstream 165648 870806 ~ 878013 (-)
CI01000001_00839822_00841040 NA coding downstream 201240 839630 ~ 842421 (-)
CI01000001_01056812_01066005 NA coding upstream 11229 1056452 ~ 1066123 (-)
CI01000001_01068423_01079855 NA coding upstream 22417 1067640 ~ 1080617 (-)
CI01000001_01158947_01164142 ZNF217 coding upstream 113175 1158398 ~ 1165151 (-)
CI01000001_01199556_01205086 NA coding upstream 154275 1199498 ~ 1205086 (-)
CI01000001_01293807_01304836 CBLN4 coding upstream 248475 1293698 ~ 1304836 (-)
G13293 NA non-coding downstream 60325 982923 ~ 983336 (-)
G13286 NA non-coding downstream 90668 952745 ~ 952993 (-)
G13266 NA non-coding downstream 122176 921263 ~ 921485 (-)
G13265 NA non-coding downstream 122516 920915 ~ 921145 (-)
G13370 NA non-coding upstream 41580 1086803 ~ 1115769 (-)
G13371 NA non-coding upstream 47293 1092516 ~ 1093860 (-)
G13364 NA non-coding upstream 140937 1186160 ~ 1215510 (-)
G13361 NA non-coding upstream 143251 1188474 ~ 1234796 (-)
G13409 NA non-coding upstream 206902 1252125 ~ 1252348 (-)
CI01000001_00362143_00378213 NA other downstream 646528 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 786144 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 908736 122814 ~ 131380 (-)
G14104 NA other upstream 718446 1763669 ~ 1771468 (-)
G14219 NA other upstream 948987 1994210 ~ 1994898 (-)
G14228 NA other upstream 1010751 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1214166 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3347091 4392314 ~ 4399804 (-)

Expression


Co-expression Network