LOC122328053


Basic Information

Item Value
gene id LOC122328053
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1246448 ~ 1324773 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU219553
ttgttgtttgttattgctgtgatcatgtgactgacAGGTTTCCCGCCTTCACATCATCAGACGAGAGAAGAGATGTTTTCTTGAGGGAcagttattttcattaaacatcacaagggtccatttatttttggaaataaaatatgtgccaaaataaatcaatcataatAAGCACTAAAATATTGCTGATATTGATTTccttaataaactaataatgatACTAACTGTAGTTTCTCCAGCTTgaattgtgtgttcatcagtagatCACTGAGGTGTTTCACTCCAGAGTCTCTGAGTTCATTCCTGCTCAGgtccagttctctcaggtgtgatgggtttgatttcagagctgaagtcaggatgagactctgtttctctgtaatactgcatccacacagactgaagacagaaagagaaaagacaacGAATCAGACACGTTATGTTCATGTGTGACTTAAATTAATCACGAGAAAAC
>TU219555
ACGCCTCAGACACCTCATTCATTACAAACTGCTGTAGAGTATAATGATACTAACTGTAGTTTCTTCAGCTTgaattgtgtgttcatcagtagatCACTGAGGTGTTTCACTCCAGAGTCTCTGAGTTCATTCCCGCTCAGGTTCAGTTCTCTCAGgtgtgatgggtttgatttcagagctgaagtcaggatgagactctgtttctctgtaatactgcatccacacagactgaagacagaaagagaaaagacaacGAATCAGACACGTTATGTTCATGTGTGACTTAAATTAATCACGAGAAAAC
>XR_006247768.1
CTTTAGCTTgaattgtgtgttcatcagtaAATCACTGAGGTGTTTCACTCCAGAGTCTCTGAGTTCATTCCCGCTCAGGTTCAGTTCTCTCAGgtgtgatgggtttgatttcagagctgaagtca

Function

GO:

id name namespace
GO:0008238 exopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219553 True 472 lncRNA 0.37 2 1246448 1257970
TU219555 False 304 lncRNA 0.41 3 1246448 1324773
XR_006247768.1 False 125 lncRNA 0.44 2 1259718 1269071

Neighbor

gene id symbol gene type direction distance location
LOC122328117 NA coding downstream 94055 1141558 ~ 1152393 (-)
LOC122328113 LOC107749352,LOC107698282,LOC107599107,LOC107599106,LOC107574663,LOC107750708 coding downstream 198211 1038827 ~ 1048237 (-)
LOC122327917 LOC107710809,LOC107574827,LOC107667624,LOC107698297,LOC107575765,LOC107570670 coding downstream 216004 1022748 ~ 1030444 (-)
lamb3 lamb3,LOC101885031 coding downstream 234841 1000531 ~ 1011607 (-)
cacna1sa cacna1sa,cacna1s,LOC107667627,LOC105900081,LOC106583479 coding downstream 287367 941317 ~ 959081 (-)
LOC122327988 NA coding upstream 99103 1423876 ~ 1427302 (-)
trnai-aau_112 NA coding upstream 108084 1432857 ~ 1432930 (-)
trnag-gcc_102 NA coding upstream 108672 1433445 ~ 1433515 (-)
LOC122327919 LOC107574663 coding upstream 245703 1570476 ~ 1865956 (-)
LOC122327910 NA coding upstream 375125 1699898 ~ 1798685 (-)
G148509 NA non-coding downstream 99227 1146507 ~ 1147221 (-)
G148505 NA non-coding downstream 107021 1139011 ~ 1139427 (-)
G148493 NA non-coding downstream 135162 1105377 ~ 1111286 (-)
G148492 NA non-coding downstream 189051 1057187 ~ 1057397 (-)
G148477 NA non-coding downstream 227409 1018531 ~ 1019039 (-)
G148557 LOC107741808,LOC107574593 non-coding upstream 54125 1378898 ~ 1431339 (-)
G148559 NA non-coding upstream 75219 1399992 ~ 1400587 (-)
G148569 NA non-coding upstream 109942 1434715 ~ 1435439 (-)
LOC122328029 wdr77 non-coding upstream 120488 1445261 ~ 1447360 (-)
LOC122328049 NA non-coding upstream 134065 1458838 ~ 1460885 (-)
LOC122328005 NA other downstream 285545 959690 ~ 960903 (-)
arl8a arl8a,LOC107750681,LOC107722853,LOC107671521,LOC107569762,LOC105900530,LOC107575230 other downstream 412993 827665 ~ 833455 (-)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536 other downstream 458237 783851 ~ 788211 (-)
G148119 NA other downstream 566551 674976 ~ 679897 (-)
G148116 NA other downstream 575028 667504 ~ 671420 (-)
G148573 NA other upstream 137100 1461873 ~ 1463176 (-)
LOC122327995 NA other upstream 255517 1580290 ~ 1625907 (-)
LOC122327997 NA other upstream 258242 1583015 ~ 1614538 (-)
G148574 NA other upstream 318937 1643710 ~ 1654340 (-)
G148613 NA other upstream 336412 1661185 ~ 1664627 (-)

Expression


Co-expression Network