XLOC_000068 (retreg2)


Basic Information

Item Value
gene id XLOC_000068
gene name retreg2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6189949 ~ 6210718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000136
TCCATGACGAGCCTCTCCTGACCAAACCCGTcatcatcaacacacacacaaacaacactggACGAGCTACAATGGCGAGCAGACGGGCCTCGGTGTCCTCCTGCTCGGCGGGTCTGGAGGCCTGGTTCCCGGCGCCCGGTGGCGCGGAGGAGGAACCGGAGCTGCGGCGGCTGCGGGAACGTCTGCGCGGGTGTCTGTCGCAGTGCGAGCCCGCGGTGGTGCTCCTTCAGCGGCTGCTGGTCTGGGAGAGGCCGCTGCACAGCATCATCGCCGCGCTCGCCCTAAACACACTCTTCTGgCTCCTGTCCTCCACATCCCTGAGGCCTCTGTTTCTCCTGAGTGTTTTTCTCATTGGTTTGACTCTACTGGAGAGATGGAAAGACAAGCTGCCACAGATCACCGCGTGGCGTCCAGAAGCGTCTGTCATTGAGCGAGAAGCGCTGAGCGATCAGCTTCGTCTGCTGAGTGTGGAGGAGCTCAGCCATCATCTTGCAGAGAGTTACCTCACCTTCAGCCTTTACATCCAGGAGATGCTGCAGTACAAGCGGCAAAACCACGGCAAGTTCTGCATCATGATGTGTTCAGGATGTTTCACGATGGCTGTAGTTGGACATTACATTCCCGGGGTTATGATCACCTACATCATATTGCTGAGTGTGCTGCTGTGGCCGCTGGTGGTTTACCATGAGCTGATCCAGAAAATGTACACCAGACTGGAGCCCATACTGATGAAACTCGACTACAGCATGAAAGGAGACACACAGCGCCGCAAATACGACAAGAGAAagatgAAGAAGGAGCAGGAAGATGGTGATGAACCGAGGGCAGAGACGGAGAGCGAGAGCGAGGAGGAGTTGTCCTGCTTCGCCCCTACTGTGGATGTGAAGACCACGGCTCTGGCGATGGCCATCACTGACTCGGAGCTGTCCGATGAGGAGGCGTCCATACTGGAAAGTGGAGGATTCTCAGTGTCCAGAGCCACCACACCACAACTCACAGACCTCTCTGAAGATCTTGACCAACAGAGTGTGCACAGTGAACCAGAAGAGGCCTTCACTAGAGACCTAGCAGAGTTTCCATCAGTAGATGAACTTCCCTCCATTGAACCGGGCCTGTTTCACTTCCCACTGGGCGTTCTTGGGTCTGATCCGACAGGAGCATCCGGCTCCGGGGAGGAAGCACTATCCCCTGCTAGCCTCCTTATTCAACACTTAGCATCACCGCTACACTTCGTCAACACGCACTTCAATGGACACGGACAAGCAGCGGCGGGGACGGTGCCACACCAAAGCATTGTGGGTACTCAGCGAGAGAGTGTTTCCAGACCCGCTCGCTCACTGGAAGCCCTCAGCGAGGAAATCGTAAGCACGGCTATATCCACCGTAGTACAAAACACTCTTTCTGCCCTCCTTCGGTCAACGGAGGCAAGCGAAGGTTCGTCGATGGATTCGTTTCTTCCGTCTGAAACGCCTCCGTGTCCAATGGAATCACCGATTGAGTCACCGTCCCAAGAAAACGAGGAAGAAGCAAGCACCGAGGAGCAGCCGGACGTTACGCTTGTACCCCAGGAAGAAGAGGACTTTGAGCTTCTGGACCAAAGCGAACTGGAACAGATGGATGAGGGGGAGGGGCTCGGATTGGACGTGGGTGGGGCTTCCACGGACACTCCCCCAAGCAGTCAGCAGCATGCAGAGCGGCAGGATTCCTAGCTTCCCGTATTGGAAactgtttcttttatttatagtCCCTTGTAGATAGCATATACTGACACACATGATTCGTGGAAGGGAATGTTGCCTTTTTTcgttgtcattttgtttttcgGGAGTGAGATCACTGTGATTGTTTTGGTGAATGTCGCGTTTCGTTAAATCAAACCAAAACCGCCTTCAGCCTCAAATCAGGCCAGTCAGATTTCAAAAGCGACCTAAAAGGTGTTTATTTTGATGAGGAATATATAAAAAGAGCCCTCTGGTTTATCAATCCCACACTGACTGAAGTCATTGGGTTTAATGGGAACACCATGGGAACAAACCATATGGGCCGAGTTTTATTTGCTTGCCAGTGCTGTTTTTTATGTGGAAGAAGAGAACGAGCAGGATATGATTGCAAATTCTCAATGAAAATTCGGTTatgttatagatttttttttatatatataattatagctGAACTAATATATTCTATAATATATA
>TCONS_00000137
caaacaacactggACGAGCTACAATGGCGAGCAGACGGGCCTCGGTGTCCTCCTGCTCGGCGGGTCTGGAGGCCTGGTTCCCGGCGCCCGGTGGCGCGGAGGAGGAACCGGAGCTGCGGCGGCTGCGGGAACGTCTGCGCGGGTGTCTGTCGCAGTGCGAGCCCGCGGTGGTGCTCCTTCAGCGGCTGCTGGTCTGGGAGAGGCCGCTGCACAGCATCATCGCCGCGCTCGCCCTAAACACACTCTTCTGgCTCCTGTCCTCCACATCCCTGAGGCCTCTGTTTCTCCTGAGTGTTTTTCTCATTGGTTTGACTCTACTGGAGAGATGGAAAGACAAGCTGCCACAGATCACCGCGTGGCGTCCAGAAGCGTCTGTCATTGAGCGGTATGTGTCTTCAGTCATCTCTACATATCTCAGCAGCACCCTGTTCTCCTTTAAGTGTTTGCATCACTTACATTCATCATTTAGCCTTTGCTGTGGCCTCAGATTGTTTCCTTATCTTAGTTAAAACACAAGTTATTTTCATCACCCTTGCCATAGAAAATGCGTAGTTGTATATCAGTgctgtttttaatgttataaCCATGTTAGTaaaggtttttaaaatgtttttcacttatttttcaagtgccttggacttagtgttttgttttgtatactTTAAAGCGGTAgctctcaaccacattcctggaggaccaccagcactgcatgttttggatgctaTCTATGTCTGTCAAaaacccattacaggtctttcagtctctgctaatgagctgatgatctgaatcgggTGTGTTTGGTTTAGGAGGCATAGAAAATGTGCAGAggtggtggtccttcaggaacgtggttgagaaacactgctttaaggaCTCTCTTATCCAAAGAGCACagatacatataataaatactgtaattaccAATACATTAATTAT
>TCONS_00000138
CGATGGCCATCACTGACTCGGAGCTGTCCGATGAGGAGGCGTCCATACTGGAAAGTGGAGGATTCTCAGTGTCCAGAGCCACCACACCACAACTCACAGACCTCTCTGAAGCAGATCTTGACCAACAGAGTGTGCACAGTGAACCAGAAGAGGCCTTCACTAGAGACCTAGCAGAGTTTCCATCAGTAGATGAACTTCCCTCCATTGAACCGGGCCTGTTTCACTTCCCACTGGGCGTTCTTGGGTCTGATCCGACAGGAGCATCCGGCTCCGGGGAGGAAGCACTATCCCCTGCTAGCCTCCTTATTCAACACTTAGCATCACCGCTACACTTCGTCAACACGCACTTCAATGGACACGGACAAGCAGCGGCGGGGACGGTGCCACACCAAAGCATTGTGGGTACTCAGCGAGAGAGTGTTTCCAGACCCGCTCGCTCACTGGAAGCCCTCAGCGAGGAAATCGTAAGCACGGCTATATCCACCGTAGTACAAAACACTCTTTCTGCCCTCCTTCGGTCAACGGAGGCAAGCGAAGGTTCGTCGATGGATTCGTTTCTTCCGTCTGAAACGCCTCCGTGTCCAATGGAATCACCGATTGAGTCACCGTCCCAAGAAAACGAGGAAGAAGCAAGCACCGAGGAGCAGCCGGACGTTACGCTTGTACCCCAGGAAGAAGAGGACTTTGAGCTTCTGGACCAAAGCGAACTGGAACAGATGGATGAGGGGGAGGGGCTCGGATTGGACGTGGGTGGGGCTTCCACGGACACTCCCCCAAGCAGTCAGCAGCATGCAGAGCGGCAGGATTCCTAGCTTCCCGTATTGGAAactgtttcttttatttatagtCCCTTGTAGATAGCATATACTGACACACATGATTCGTGGAAGGGAATGTTGCCTTTTTTcgttgtcattttgtttttcgGGAGTGAGATCACTGTGATTGTTTTGGTGAATGTCGCGTTTCGTTAAATCAAACCAAAACCGCCTTCAGCCTCAAATCAGGCCAGTCAGATTTCAAAAGCGACCTAAAAGGTGTTTATTTTGATGAGGAATATATAAAAAGAGCCCTCTGGTTTATCAATCCCACACTGACTGAAGTCATTGGGTTTAATGGGAACACCATGGGAACAAACCATATGGGCCGAGTTTTATTTGCTTGCCAGTGCTGTTTTTTATGTGGAAGAAGAGAACGAGCAGGATATGATTGCAAATTCTCAATGAAAATTCGGTTatgttatagatttttttttatatatataattatagctGAACTAATATATTCTATAATATATA

Function

symbol description
retreg2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RETREG2 (reticulophagy regulator family member 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-128 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RETREG2 (reticulophagy regulator family member 2).

Ensembl:

ensembl_id ENSDARG00000063270

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000136 False 2195 mRNA 0.52 9 6189949 6210718
TCONS_00000137 False 936 lncRNA 0.48 3 6189997 6196763
TCONS_00000138 True 1298 mRNA 0.48 2 6206950 6210718

Neighbor

gene id symbol gene type direction distance location
XLOC_000067 cnppd1 coding upstream 4417 6161930 ~ 6185532 (+)
XLOC_000066 abcb6a coding upstream 31340 6135176 ~ 6158609 (+)
XLOC_000065 NA coding upstream 390857 5795013 ~ 5799092 (+)
XLOC_000064 NA coding upstream 461265 5706970 ~ 5728684 (+)
XLOC_000063 cpo coding upstream 602374 5576151 ~ 5587575 (+)
XLOC_000069 fastkd2 coding downstream 14775 6225493 ~ 6272146 (+)
XLOC_000070 LO018629.1 coding downstream 96587 6307305 ~ 6329292 (+)
XLOC_000071 hecw2b coding downstream 146341 6357059 ~ 6366066 (+)
XLOC_000072 NA coding downstream 169160 6379878 ~ 6554470 (+)
XLOC_000073 NA coding downstream 187492 6398210 ~ 6403223 (+)
XLOC_000059 NA non-coding upstream 876354 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1159794 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1509472 4598060 ~ 4680477 (+)
XLOC_000076 NA non-coding downstream 454315 6665033 ~ 6668339 (+)
XLOC_000077 NA non-coding downstream 548465 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 non-coding downstream 576972 6787690 ~ 6787804 (+)

Expression


Co-expression Network