G148679


Basic Information

Item Value
gene id G148679
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2129842 ~ 2132180 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU219862
tttttttttacattttaaatttcccGCCACTAAACCAACGGTTCCGAGGACAGCGGCGGGAATCACCTCAGAATGGCGGAGATAAGAAATGGCAATTATCTCTGTAAAAAGTGGCCTATTCTTATTTCGCATACAAACCTGAACGAAATTGAACGTGATTTAGGTAATTTGGCGTCGAAATCTGCGTTTGGGTGGATGCGAAGGACGTCGATTCGATCAACTCCGTCTCGTTGATGACGTCCTCGTTATGAGCACAGTCACCGAAGTGCAGCAGGAAATACGTAGGACAGCTTCGAGACCTTCACTCCTCGTTAGTATAGTGATTTCCGCTCAATGAACCGATGATGGCGAAGtctccagcaaaaaaaaaaaaacaaaacttgtgCCCCGTGTGAGGCTCGAACTCACGACCTTCAGATTATGAGACTGACGCGCTGCCTACTGCGCCAACGAGGCCTGAGGAGCCGAGCTGCCTAACCTGGTCATGTTCCCGCAGTCTGTGAGTCTCAGCTCCCTCCTTCATTATCAACGTTTGATTATATCTGTCATGATCCCAAAAGACggaagaaacacaaaaaaaggacTGAGGATCGGTTCAACCTCAGCCACTAGAGGGAGCCAAAGCGAACAGCCACGTGCATCAATTACATTCAAAACtgtgtatttcaaatattaaatgcata

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

RNA

RNA id representative length rna type GC content exon number start site end site
TU219862 True 683 lncRNA 0.46 3 2129842 2132180

Neighbor

gene id symbol gene type direction distance location
aqp12 NA coding downstream 877 2124590 ~ 2128965 (-)
trnai-aau_113 NA coding downstream 1907 2127862 ~ 2127935 (-)
LOC122327992 NA coding downstream 5873 2120589 ~ 2123969 (-)
LOC122328100 NA coding downstream 15599 2112781 ~ 2114243 (-)
LOC122328124 NA coding downstream 166615 1959836 ~ 1963227 (-)
pak2b pak2b,pak2,LOC107741800,LOC107678112,LOC107679089 coding upstream 561 2132741 ~ 2142363 (-)
pigx NA coding upstream 10858 2143038 ~ 2146500 (-)
ing5a ing5,ing5a,LOC107574595,LOC107678097,LOC107548837,LOC107679074,LOC108424972 coding upstream 16498 2148678 ~ 2155381 (-)
lmnb2 lmnb2,LOC107679080,LOC107678108,LOC107744643,LOC107741802 coding upstream 74303 2206483 ~ 2217633 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847,LOC107678106 coding upstream 89659 2221839 ~ 2231871 (-)
G148687 NA non-coding downstream 30905 2098217 ~ 2098937 (-)
G148663 NA non-coding downstream 171749 1952937 ~ 1958093 (-)
G148632 LOC106565674,LOC106583071 non-coding downstream 222095 1809065 ~ 1907747 (-)
G148630 irf6,LOC107698281,LOC107599105,LOC107662833 non-coding downstream 223913 1808166 ~ 1905929 (-)
G148707 NA non-coding upstream 24076 2156256 ~ 2156817 (-)
LOC122328197 NA non-coding upstream 386257 2518437 ~ 2524302 (-)
LOC122327855 NA non-coding upstream 394914 2527094 ~ 2563223 (-)
G148749 NA non-coding upstream 459392 2591572 ~ 2592729 (-)
G148860 NA non-coding upstream 565933 2698113 ~ 2759687 (-)
LOC122328032 NA other downstream 13659 2114320 ~ 2116183 (-)
G148613 NA other downstream 465215 1661185 ~ 1664627 (-)
G148574 NA other downstream 475502 1643710 ~ 1654340 (-)
LOC122327995 NA other downstream 503935 1580290 ~ 1625907 (-)
gpr35.2 NA other upstream 112451 2244631 ~ 2250561 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 919220 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 1091968 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 1123216 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 1193395 3325575 ~ 3366122 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G388134 NA non-coding NC_047621.1 CM018567.1 16429227 ~ 16435379 (-)