LOC122327855


Basic Information

Item Value
gene id LOC122327855
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2527094 ~ 2563223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU219961
GCGCCGTGAAGCTCCCAGGCCTAAATTAGATTCATGCTTCCTTGAAAGAACAGAGAAATTGGTAGGATGAAAACTGAAGGTCAATGTCAGCTCGCTCTCAACAAAATGCCGCCTCCACGCGAGCGGGATTAGGTCTCGACGCCGGGGCTCCGGAGAGCAGGGGAACGAGGAGCGAGCGGAGAACGGGCATCAGGTGGAGAGGGGCTCTTATCATCCGCAGCCACATCTGAACTGGTTCCACCTCAGAAACGTGCTTGAAGACACATATTAGACACGGCAGAACAGCAATAGCTGATGGGTAACACCACACAACGCTGAACTGAACATTCGCTCGTTTGGCGGATGCTCTTACCCTGCATCTGTGGTACGTGTTTCCAGCTGCATCTCGCCCATCTCTGGTTGCTCGGGACTCTGCAGCGCTAGCTCCGGGACGACGATGGCTGTCCGCCAGCAGGAGACTGCAGGGGATCTTGGCTGGCAGAGCTGCTTGTAATCGCCGCTGATGGGCCCTTATTAGCCATGCTTGTCTGCGGACGTCACCCGGGAGACCGTGTGGAAAGGGACAGGGACACATCTGCTTATCCGAACCACAATCATCTCACATGACTGCAGGCCAGTGGCAAACGCCAAACCCGCTGCCCAGAAGCATCAGCTAAATCCAGCCTGCCATATTAACTGGCCGAGAGGACAAGCGAAGCACTTAATCTGCCATCCTGAATCGCGTGCAGACGAGTGGATGGGTACCAGACTCCTGCCTGGAGCACATGAGGGCGGAACGGGGCGTTCCCGGTGTCCGGCGGC
>XR_006247728.1
TAGCGCTGTTTTGTGTTAGCATGTTAGCATGCAAAATTCATGAGAACGTTTCGCCaaaacaaagttgtttttttgcaaaacattgcTGGATTTTCCATAAAATTTGAACATTAGAACTATTCTCACATAATGTTGCGTTAACTCAACgctaaaatattaacatgtacACATGACTTTCGACTCGCGTTGTTATGTTAACTTCAAGCTAGCTTGATAGCGAAATAGTAAAATTTTGACGTTACGATTTTTGACGCATATTGTTAACTTCTAAAGTGTTTGCATGCAAAATTTGGACAACCAGGAAACCTGTGCACTACAAACTTTTTCACATGTCGTCgataaaaaagattatttctACAAATGTTGCTATTAATACAAACTCTTTTTGTTGGAATAAACATGCTACGCTGTATTGTGCGCAACATTATAAGTAGGGAcagttttgattttatgttgACAAAGGTGCTAAAACTTCACCTTCTTACTTACTTTAAGTCATAATACTGTACAAAATTTGTGATTCAACATACAGACGTGTCGCTTTGTCAGCGCTAGGAAGTGGGAttatttcctctctctcttcctgtctctccTTGATTTTCTGCCGCTCTCTTTCGACGTCTCGCTCGCTCTTTGTACTCGTCGAGAGCCGAAGATCAAAGACTAGCGCCGTGAAGCTCCCAGGCCTAAATTAGATTCATGCTTCCTTGAAAGAACAGAGAAATTGGTAGGATGAAAACTGAAGGTCAATGTCAGCTCGCTCTCAACAAAATGCCGCCTCCACGCGAGCGGGATTAGGTCTCGACGCCGGGGCTCCGGAGAGCAGGGGAACGAGGAGCGAGCGGAGAACGGGCATCAGGTGGAGAGGGGCTCTTATCATCCGCAGCCACATCTGAACTGGTTCCACCTCAGAAACGTGCTTGAAGACACATATTAGACACGGCAGAACAGCAATAGCTGATGGGTAACACCACACAACGCTGAACTGAACATTCGCTCGTTTGGCGGATGCTCTTACCCTGCATCTGTGGTACGTGTTTCCAGCTGCATCTCGCCCATCTCTGGTTGCTCGGGACTCTGCAGCGCTAGCTCCGGGACGACGATGGCTGTCCGCCAGCAGGAGACTGCAGGGGATCTTGGCTGGCAGAGCTGCTTGTAATCGCCGCTGATGGGCCCTTATTAGCCATGCTTGTCTGCGGACGTCACCCGGGAGACCGTGTGGAAAGGGACAGGGACACATCTGCTTATCCGAACCACAATCATCTCACATGACTGCAGGCCAGTGGCAAACGCCAAACCCGCTGCCCAGAAGCATCAGCTAAATCCAGCCTGCCATATTAACTGGCCGAGAGGACAAGCGAAGCACTTAATCTGCCATCCTGAATCGCGTGCAGACGAGTGGATGGGTACCAGACTCCTGCCTGGAGCACATGAGGGCGGAACGGGGCGTTCCCGGTGTCCGGCGGCGGTCGATACTCACGCCAGGAGGACTGAAGGGTGACGCCGCAGGCCATCCAGCATTATGTGTGAATGTTTGCAGCTGACCCACACAAACCGCCGCGGATCTTCGAGCTGTAGGTGGACTGatcttctgtgaggacatggTGTTAAACAGGAGTGCGATGAAGCGTGACGGCTGCCAAGAGATGTCTGGATCTCTGCTTTGTGCGCCTTAAGTATAAATGTGTCTCCCTGTAGAAGAACATGATCTGGGAATGATGCACTGTACAACTGAATGCTTATTAGGGTAAATTTGTGCATTATATACAATCACACCAATTCAcaccaaataatattttaagcctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219961 False 801 lncRNA 0.57 3 2527434 2562557
XR_006247728.1 True 1807 lncRNA 0.47 3 2527094 2563223

Neighbor

gene id symbol gene type direction distance location
ptprsa ptprd,LOC107559826,LOC107679075 coding downstream 57533 2297233 ~ 2469561 (-)
tbxa2r tbxa2r,LOC107744660,LOC107678103,LOC107559829,LOC107562097,LOC107679093,LOC107717168 coding downstream 237767 2282224 ~ 2289327 (-)
si:zfos-943e10.1 LOC107678111,LOC107717170,LOC107559831,LOC107562095,LOC107679086 coding downstream 257239 2256136 ~ 2269855 (-)
gpr35.1 LOC107717171,LOC107678099,LOC107580869,LOC107678091 coding downstream 271634 2251211 ~ 2255460 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847,LOC107678106 coding downstream 295223 2221839 ~ 2231871 (-)
kdm4b kdm4b,LOC107717157,LOC107742799,LOC107679073,LOC107561592,LOC107549366,LOC107660208,LOC108412081 coding upstream 127403 2690626 ~ 2733830 (-)
uhrf1 uhrf1,LOC107561590 coding upstream 171936 2735159 ~ 2748590 (-)
fbn2b fbn2b,fbn3,LOC107704489,LOC107742800,LOC108441289 coding upstream 221455 2784678 ~ 2849559 (-)
LOC122328226 LOC107549362,LOC107704491,LOC107742801 coding upstream 312835 2876058 ~ 2878821 (-)
trnad-guc_18 NA coding upstream 316341 2879564 ~ 2879635 (-)
LOC122328197 NA non-coding downstream 2792 2518437 ~ 2524302 (-)
G148707 NA non-coding downstream 370277 2156256 ~ 2156817 (-)
G148679 NA non-coding downstream 394914 2129842 ~ 2132180 (-)
G148749 NA non-coding upstream 28349 2591572 ~ 2592729 (-)
G148860 NA non-coding upstream 134890 2698113 ~ 2759687 (-)
G148889 NA non-coding upstream 311188 2874411 ~ 2983937 (-)
LOC122327605 NA non-coding upstream 332737 2895960 ~ 2898650 (-)
G148906 NA non-coding upstream 478229 3041452 ~ 3045417 (-)
gpr35.2 NA other downstream 276533 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 410911 2114320 ~ 2116183 (-)
G148613 NA other downstream 862467 1661185 ~ 1664627 (-)
G148574 NA other downstream 872754 1643710 ~ 1654340 (-)
LOC122327997 NA other downstream 912556 1583015 ~ 1614538 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 488177 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 660925 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 692173 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 762352 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 814809 3378032 ~ 3451429 (-)

Expression


Co-expression Network