dnase1l4.1 (zgc:101000,LOC107566350,LOC107712182,LOC107702655)


Basic Information

Item Value
gene id dnase1l4.1
gene name zgc:101000,LOC107566350,LOC107712182,LOC107702655
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3224148 ~ 3232213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU220500
ATGTCAATGTTTCGCAACCAATGACAACGAACGTCCGAATTCGAAATTTACAGCCTTTATTAGTTAACAAGAGCAATATaaagcaactaaaaaaaaataactattttactTTGCCACTGTGGACCCAAATCATAAGTTGGTGGTTTGAACAGCAagcaaatatacaataaaaacacattcatttcttCCCAGACTTCTTGATTCCTCCTCTCAAAGGTCCTTTTCCAGCAGCCTTGGCTTTCATCTGTTCCATTGCTTTCTGCTCGTCTTTCTGCTTCTGTTTGTAAGCCATGTCC
>XM_043222891.1
GGCTGGGCCAAATCTCTAAACAGGTTCCTGTGTCTAGCCAATCATGTGTGTCCAATATAAGTAATGCAACTGACTTTAGGAATCTTTACAGTCTAGGAATCTCTTTTCTTCAGTGCATCTTTGGACCAGTGCTTTGGAATCATGAAGGTCGCCTCTTTTAACATCCAGAAATTTGGGAAATCCAAAATCTCCGATCCGTTCATCCTGAAAACCCTGATCAAGATCGTGTCACGCTATGACGTCATTGTCATTCTGGAGGTGGTGGATTCTAGCGGAGGTGCGGTGGATCATTTTCTCGAAGAATTGAATAAGTCCAACAAGACGCACCACTACACCTTAGAGATCAGCACACGCCTGGGAAGAGGAAATTATAAAGAACAGTTCATGTTCCTCTACAGGGATGACCTTGTGGATTTGGTCGGGTCTTACCAATACGAAGACAACCAGCCTGGAGATGAAGATGCTTTCGCCAGAGAACCGTATATCCTGCGTTTCAAATGTCACAACACAGTGTTGGAAGATTTGGTGCTGATGCCCGTCCACACCAAGCCTGAGGACTCGGTGAAGGAACTCGACGAACTCTACGACGTGTTTCAGGATGTCAAGACGAAATGGAAGACCGATAACATCATGATtttgggggacttcaacgcggATGGGAGTTACGTGTCagataaagaaatgaaaacaatccGAATCAGGAGTGACAAAAACTTTCACTGGCTGATCGCGGATGACGAGGACACCACAGCCAGCACCAGAAATGACAACACTTACGATCGGATTGTGGTTTATGGAGACGATATGCTGGACGCTATAGTTCCGAACTCGGCGAAACCGTTCAACTTCCAGAAGGCCTACAAACTGAAAGAGGAGGATGCGCTAAAAGTGAGCGACCACTATCCGGTAGAGGTGGAACTGAAGAAAAAACGTAAGCAGCTTAAACGTAAACGTTAAACGAAGACGACGCTGTGAGATGCTACAATTAATGAACAAGGAAATATGATTCCGGAGATCTGGATCGGCTTTTACTAACACTTGTTTACACGAGACTGGATTTACTTGATATGTTATCGTACATTTGTTTCGAATGTCAATGTTTCGCAACCAATGACAACGAACGTCCGAATTCGAAATTTACAGCCTTTATTAGTTAACAAGAGCAATATaaagcaactaaaaaaaaataactattttactTTGCCACTGTGGACCCAAATCATAAGTTGGTGGTTTGAACAGCAagcaaatatacaataaaaacacattcatttcttCCCAGA
>XM_043222892.1
TGGACCCAAACGTCTGATGTTGAAAGATGCGATCTTCATGGTGTCTACCTTAAGAAAGTGAACACATTATCACAGTGGGAGACGAACTTCACGACAACAACTCTTCAGACTGGCTTTGTGCTTTCAGGAATCATGAAGGTCGCCTCTTTTAACATCCAGAAATTTGGGAAATCCAAAATCTCCGATCCGTTCATCCTGAAAACCCTGATCAAGATCGTGTCACGCTATGACGTCATTGTCATTCTGGAGGTGGTGGATTCTAGCGGAGGTGCGGTGGATCATTTTCTCGAAGAATTGAATAAGTCCAACAAGACGCACCACTACACCTTAGAGATCAGCACACGCCTGGGAAGAGGAAATTATAAAGAACAGTTCATGTTCCTCTACAGGGATGACCTTGTGGATTTGGTCGGGTCTTACCAATACGAAGACAACCAGCCTGGAGATGAAGATGCTTTCGCCAGAGAACCGTATATCCTGCGTTTCAAATGTCACAACACAGTGTTGGAAGATTTGGTGCTGATGCCCGTCCACACCAAGCCTGAGGACTCGGTGAAGGAACTCGACGAACTCTACGACGTGTTTCAGGATGTCAAGACGAAATGGAAGACCGATAACATCATGATtttgggggacttcaacgcggATGGGAGTTACGTGTCagataaagaaatgaaaacaatccGAATCAGGAGTGACAAAAACTTTCACTGGCTGATCGCGGATGACGAGGACACCACAGCCAGCACCAGAAATGACAACACTTACGATCGGATTGTGGTTTATGGAGACGATATGCTGGACGCTATAGTTCCGAACTCGGCGAAACCGTTCAACTTCCAGAAGGCCTACAAACTGAAAGAGGAGGATGCGCTAAAAGTGAGCGACCACTATCCGGTAGAGGTGGAACTGAAGAAAAAACGTAAGCAGCTTAAACGTAAACGTTAAACGAAGACGACGCTGTGAGATGCTACAATTAATGAACAAGGAAATATGATTCCGGAGATCTGGATCGGCTTTTACTAACACTTGTTTACACGAGACTGGATTTACTTGATATGTTATCGTACATTTGTTTCGAATGTCAATGTTTCGCAACCAATGACAACGAACGTCCGAATTCGAAATTTACAGCCTTTATTAGTTAACAAGAGCAATATaaagcaactaaaaaaaaataactattttactTTGCCACTGTGGACCCAAATCATAAGTTGGTGGTTTGAACAGCAagcaaatatacaataaaaacacattcatttcttCCCAGA
>XM_043222893.1
GGCTGGGCCAAATCTCTAAACAGGTTCCTGTGTCTAGCCAATCATGTGTGTCCAATATAAGTAATGCAACTGACTTTAGGAATCTTTACAGTCTAGGAATCTCTTTTCTTCAGTGCATCTTTGGACCAGTGCTTTGGAATCATGAAGGTCGCCTCTTTTAACATCCAGAAATTTGGGAAATCCAAAATCTCCGATCCGTTCATCCTGAAAACCCTGATCAAGATCGTGTCACGCTATGACGTCATTGTCATTCTGGAGGTGGTGGATTCTAGCGGAGGTGCGGTGGATCATTTTCTCGAAGAATTGAATAAGTCCAACAAGACGCACCACTACACCTTAGAGATCAGCACACGCCTGGGAAGAGGAAATTATAAAGAACAGTTCATGTTCCTCTACAGGGATGACCTTGTGGATTTGGTCGGGTCTTACCAATACGAAGACAACCAGCCTGGAGATGAAGATGCTTTCGCCAGAGAACCGTATATCCTGCGTTTCAAATGTCACAACACAGTGTTGGAAGATTTGGTGCTGATGCCCGTCCACACCAAGCCTGAGGACTCGGTGAAGGAACTCGACGAACTCTACGACGTGTTTCAGGATGTCAAGACGAAATGGAAGACCGATAACATCATGATtttgggggacttcaacgcggATGGGAGTTACGTGTCagataaagaaatgaaaacaatccGAATCAGGAGTGACAAAAACTTTCACTGGCTGATCGCGGATGACGAGGACACCACAGCCAGCACCAGAAATGACAACACTTACGATCGGATTGTGGTTTATGGAGACGATATGCTGGACGCTATAGTTCCGAACTCGGCGAAACCGTTCAACTTCCAGAAGGCCTACAAACTGAAAGAGGAGGATGCGCTAAAAGTGAGCGACCACTATCCGGTAGAGGTGGAACTGAAGAAAAAACGTTAAACGAAGACGACGCTGTGAGATGCTACAATTAATGAACAAGGAAATATGATTCCGGAGATCTGGATCGGCTTTTACTAACACTTGTTTACACGAGACTGGATTTACTTGATATGTTATCGTACATTTGTTTCGAATGTCAATGTTTCGCAACCAATGACAACGAACGTCCGAATTCGAAATTTACAGCCTTTATTAGTTAACAAGAGCAATATaaagcaactaaaaaaaaataactattttactTTGCCACTGTGGACCCAAATCATAAGTTGGTGGTTTGAACAGCAagcaaatatacaataaaaacacattcatttcttCCCAGA

Function

NR:

description
deoxyribonuclease-1-like isoform X1

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0004519 endonuclease activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220500 False 296 lncRNA 0.38 2 3224148 3224527
XM_043222891.1 True 1283 mRNA 0.43 10 3224335 3229242
XM_043222892.1 False 1274 mRNA 0.43 10 3224335 3232213
XM_043222893.1 False 1262 mRNA 0.43 10 3224335 3229242

Neighbor

gene id symbol gene type direction distance location
ccdc51 ccdc51,LOC107702652,LOC107712177,LOC107698574,LOC107718461,LOC107577765,LOC107549370 coding downstream 647 3220932 ~ 3223501 (-)
mcm2 mcm2,LOC107718478 coding downstream 3656 3213764 ~ 3220492 (-)
podxl2 LOC107702650,LOC107566349,LOC107712169,LOC107698566,LOC107718457,LOC107549351 coding downstream 11157 3196422 ~ 3212991 (-)
LOC122328126 LOC107702631,LOC107566362,LOC107698575,LOC107549383,LOC107712181 coding downstream 34265 3188034 ~ 3189883 (-)
LOC122327372 NA coding downstream 38675 3181114 ~ 3185473 (-)
wu:fc11c11 LOC107702623,LOC107566345 coding upstream 6896 3239109 ~ 3243922 (-)
LOC122327520 LOC107694008,LOC107712191,LOC107566346,LOC107718469,LOC107698588,LOC107591183 coding upstream 19900 3252113 ~ 3253715 (-)
LOC122327437 NA coding upstream 40922 3273135 ~ 3277399 (-)
LOC122327353 NA coding upstream 48396 3280609 ~ 3286516 (-)
LOC122327550 NA coding upstream 58297 3290510 ~ 3305204 (-)
G149071 NA non-coding downstream 29344 3193288 ~ 3194804 (-)
G148927 NA non-coding downstream 121251 3102579 ~ 3102897 (-)
G148906 NA non-coding downstream 178731 3041452 ~ 3045417 (-)
G148889 NA non-coding downstream 240211 2874411 ~ 2983937 (-)
LOC122327605 NA non-coding downstream 325498 2895960 ~ 2898650 (-)
G149074 NA non-coding upstream 1459 3233672 ~ 3235759 (-)
G149076 NA non-coding upstream 10208 3242421 ~ 3242805 (-)
G149081 NA non-coding upstream 19036 3251249 ~ 3251471 (-)
G149111 NA non-coding upstream 117880 3350093 ~ 3353485 (-)
G149114 NA non-coding upstream 118241 3350454 ~ 3351474 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other downstream 158971 3051400 ~ 3065177 (-)
gpr35.2 NA other downstream 973587 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 1107965 2114320 ~ 2116183 (-)
G148613 NA other downstream 1559521 1661185 ~ 1664627 (-)
G148574 NA other downstream 1569808 1643710 ~ 1654340 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 23183 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 93362 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 145819 3378032 ~ 3451429 (-)
G149102 NA other upstream 156047 3388260 ~ 3414711 (-)
LOC122327463 NA other upstream 192133 3424346 ~ 3443874 (-)

Expression


Co-expression Network