LOC122327586


Basic Information

Item Value
gene id LOC122327586
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4957401 ~ 4965773 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU221923
CATGATCAATGAAGACCAAGAAACGGGTGatgaaggtgaaaaaaaaagggCCGGTTATTATAAAGACACTGTTATAAGTGAAGTGAATAAAAAGTCTCAACTGGAAAAGTAATGAATGAAGAAGCACCTGTTATAAGTGACTGAGCAGCAGACAGCTAAGCCACGGGGAGTCTGATGCCTTCacactacagtaaaaaaaaaaattatgaaaactgtTGCTAAAGCATTAACATTACTCAAAATTAATTCACTACATATACGTAATCTTATCCTTTACTTTattcaaagtgaaagtaaaataaatatgtttgcatgtgttactttttgtttgcttgccgTTAATTACATAACGTAAGTGGCTTTTGGAATATAAGCAGATGAAGTAGTAGATGATAAAATGAATAGTGAAGGTGAAATATTGTTGAATTAACTAACATGATTCATATTCTCTTGGTTTCTGTAAACAATATTCttaacaatttcaaataaaaaaaataaaaacactattgAAGTCAAATGGGTCCAAAAACTTTCTGACTAtgagcattcttcaaaatatcttctgttaTGGTGAGGAGAGCAAAGAAATTctatacaggtttagaacaacgcCAGTGTCTGACATAAGCTACCCTACTACTTCTCAGGCTTTATCTCGAAC
>XR_006247662.1
CAGCTTTGGTTGATGCATGATCAATGAAGACCAAGAAACGGGTGatgaaggtgaaaaaaaaagggCCGGTTATTATAAAGACACTGTTATAAGTGAAGTGAATAAAAAGTCTCAACTGGAAAAGTAATGAATGAAGAAGCACCTGTTATAAGTGACTGAGCAGCAGACAGCTAAGCCACGGGGAGTCTGATGCCTTCacactacagtaaaaaaaaaaattatgaaaactgtTGCTAAAGCATTAACATTACTCAAAATTAATTCACTACATATACGTAATCTTATCCTTTACTTTattcaaagtgaaagtaaaataaatatgtttgcatgtgttactttttgtttgcttgccgTTAATTACATAACGTAAGTGGCTTTTGGAATATAAGCAGATGAAGTAGTAGATGATAAAATGAATAGTGAAGGTGAAATATTGTTGAATTAACTAACATGATTCATATTCTCTTGGTTTCTGTAAACAATATTCttaacaatttcaaataaaaaaaataaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221923 True 661 lncRNA 0.33 3 4957401 4965758
XR_006247662.1 False 518 lncRNA 0.31 3 4957559 4965773

Neighbor

gene id symbol gene type direction distance location
asic1b asic1b,asic1,LOC107569540,LOC107727129 coding downstream 126902 4790547 ~ 4830499 (-)
smarcd1 smarcd1,LOC107698569,LOC107694342 coding downstream 172186 4777983 ~ 4785215 (-)
gpd1b gpd1b,LOC107698578,LOC107721242,LOC107727040,LOC107694423,LOC107566434 coding downstream 180188 4773807 ~ 4777213 (-)
LOC122327538 NA coding downstream 184658 4770578 ~ 4772743 (-)
LOC122328160 NA coding downstream 189873 4760030 ~ 4767528 (-)
LOC122327307 NA coding upstream 50318 5016091 ~ 5021442 (-)
LOC122327494 NA coding upstream 94425 5060198 ~ 5071072 (-)
LOC122327526 NA coding upstream 119067 5084840 ~ 5086512 (-)
LOC122328166 NA coding upstream 141580 5107353 ~ 5108551 (-)
LOC122327498 LOC107740712,LOC107755677 coding upstream 142987 5108760 ~ 5110661 (-)
G149956 NA non-coding downstream 17562 4939435 ~ 4939839 (-)
G149594 NA non-coding downstream 276325 4679919 ~ 4681076 (-)
G149598 NA non-coding downstream 285631 4662075 ~ 4671770 (-)
G149592 LOC107729908,LOC107712186,LOC107702610,LOC107702613 non-coding downstream 331496 4625597 ~ 4625905 (-)
G149587 NA non-coding downstream 342516 4614307 ~ 4614885 (-)
G149962 NA non-coding upstream 25837 4991610 ~ 5003689 (-)
G149963 NA non-coding upstream 26188 4991961 ~ 4999176 (-)
G150000 NA non-coding upstream 175474 5141247 ~ 5142179 (-)
LOC122327581 NA non-coding upstream 195599 5161372 ~ 5167342 (-)
G150008 NA non-coding upstream 211916 5177689 ~ 5181252 (-)
LOC122327545 NA other downstream 220541 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 368979 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 470476 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 523901 4428805 ~ 4433500 (-)
LOC122327462 LOC107741386,LOC107698560 other downstream 675633 4272551 ~ 4281768 (-)
LOC122327354 NA other upstream 180153 5145926 ~ 5153856 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 561457 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 572783 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 672365 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 695968 5661741 ~ 5672809 (-)

Expression


Co-expression Network