G150092 (LOC107658400)


Basic Information

Item Value
gene id G150092
gene name LOC107658400
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5497941 ~ 5506152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222121
GTAATTAGATATGCATTAAACCTCAAACAAACTCACAAAATTGAGTACAACTTTTATGGTATTTAATATATCGTTAAGCACAGAAATCCACAAAAGTCTACAATATGAATACATTGCTGTCATTGCTGTACACTTGCTACATTGCAAGTCAGATCATGTTGAACAGATTTCCAGCTCATTAAGCATGAACAAGTCCTGACAACTCATAAAACTAACAGTGggttggaagaaaaaaaagaacttaaaaGTGCTCTGAAGATTTGTGCTCTTGAGGAAAATAACAGAAAGCCAAGTGACATATTTCTAACACCAGAGGGCATCCTCAAACCGAGTCAAGGTTTTTGCTTCCTGAATGATTTATGACTTTCATAAACCACAGGGTTTTGAGTTCTTCATCTTTCTCTACTATAATCCAATAACTGGTTAAGTAGACAAATCCAGACAACATAAATGCAACAGTTTGATCAGTCTAGCATGATAATCCTGGAGTATATTGCTTCCTCTGTCTCATCAgctttctgaaataaaacacaaattatctGTAAGAAATGAGGCTCACCAAACATACAAGTACCGTGTCATTGTTGTGTTTGTaatgcagagagaaagaaacttgtaagatttttcataaatgtctgatcaaaaatataattgtttgtgtttaattgcagaGCTTAAAGTCTAAATGCTCCTGACATTGTGCACAGAATCTACATTTTGACATTAAGTGATCATGATTTTATACTACAAAGAGATATTTTCCAAGACGACTTCAATTCAATTCTGTTCCTCTTCAAATCAGACTGATTACAAAAACCTTACCCTTTTCTGGTCATTTTGTCTAAAAAATTGTATCTCTTCATATTCAGACTGGACTGTTTCCGCTGTATTCACACAAAGCCTTTTCCTGAAGTTTTAGGGTTAAGAGAGTTAATTTCTCGGTCATTAGCATCAGATATATAAACTTGATGCAAAAGCATTATTACTTTAATTGTTAAAGGTAGAGAAGACAGTGCTTACTGTTTTGTGTCGCTCTTTTGTGTTTCCTGTAGAGACAGTAGATCACACTCACGAGTACAAGCAGAGCTGCAGCAGACACACATGCAGCAAAGACTGGGTTTACATTAAACCATCCTGAAATAGAAAGAGAACAGATAACTCTGGAATCACATCAACAGTGCATTTACAGACATGTTACCTGAACAGACAATTACCTGGACATGTCTGACAGAGCTGACTGATGTTcagatgtgtggtctggtttctgatggggttgttgatcacacagctgtaggtgtttttctcctgatattccacctccagaggtagagagagactgatgctgagatcagacacactgatgctggacaataaactgtttcctttgtaccaggagagagtcacatgactcaCGTTCACCGCCGAACACAGCAGTGAACAATTCTGGTTCATTAGTCTTTCAGACGATGAAGAACACTGTGAAGAGTCTCTGGTGATGAC

Function

NR:

description
PREDICTED: SLAM family member 5-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222121 True 1500 lncRNA 0.37 2 5497941 5506152

Neighbor

gene id symbol gene type direction distance location
LOC122327326 NA coding downstream 1862 5492090 ~ 5496079 (-)
LOC122328171 NA coding downstream 7187 5481708 ~ 5490754 (-)
LOC122328170 NA coding downstream 17082 5471936 ~ 5480859 (-)
LOC122327381 NA coding downstream 63798 5430855 ~ 5434143 (-)
LOC122327375 LOC107570603,LOC107690762 coding downstream 119054 5373452 ~ 5378887 (-)
LOC122327491 NA coding upstream 17086 5523238 ~ 5525432 (-)
rdh5 rdh5,LOC107573570,LOC107653177,LOC107586996,LOC107745400 coding upstream 27044 5533196 ~ 5536573 (-)
rbck1 LOC107658397,LOC107745403,LOC107653168,LOC107573567,LOC107586913,LOC107720991 coding upstream 44477 5550629 ~ 5558239 (-)
stab1 stab1,LOC107745410,LOC107658393,LOC107653171,LOC107721010,LOC107593096 coding upstream 100892 5607044 ~ 5634799 (-)
ogna ogn,LOC107658388,LOC107756001,LOC107586921 coding upstream 175439 5681591 ~ 5687034 (-)
G150086 LOC107586973,LOC107676140,LOC107698552,LOC107712186,LOC107658401,LOC107676139,LOC107681664 non-coding downstream 27433 5418456 ~ 5470508 (-)
G150093 NA non-coding downstream 43609 5451436 ~ 5454332 (-)
LOC122327610 NA non-coding downstream 188051 5308250 ~ 5309890 (-)
G150071 cacna2d2b,LOC107558272,LOC107653164,LOC107720977,LOC107655410 non-coding downstream 194703 5302860 ~ 5303238 (-)
G150060 NA non-coding downstream 221199 5273557 ~ 5276742 (-)
G150121 NA non-coding upstream 2418 5508570 ~ 5512967 (-)
G150161 tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987 non-coding upstream 39116 5545268 ~ 5545768 (-)
G150125 LOC107586915,LOC107745408,LOC107658396,LOC107721006,LOC107593072 non-coding upstream 73318 5579470 ~ 5583041 (-)
G150184 NA non-coding upstream 98005 5604157 ~ 5604418 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding upstream 147899 5654051 ~ 5655376 (-)
LOC122327354 NA other downstream 344085 5145926 ~ 5153856 (-)
LOC122327545 NA other downstream 761081 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 909519 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 1011016 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 1064441 4428805 ~ 4433500 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 21078 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 32404 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 131986 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 155589 5661741 ~ 5672809 (-)
LOC122327537 NA other upstream 251854 5758006 ~ 5763982 (-)

Expression


Co-expression Network