bloc1s1 (bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997)


Basic Information

Item Value
gene id bloc1s1
gene name bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5538556 ~ 5542080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222186
CCGCGCTTTCCGTATGTTTTGGGACGTTTGTCATGTGAGTCCAGGGATTGTCAAAACGTTTAGAGAAAACCGACTTCATCAAATGAACgtgttttattttccatcaCGATAAATGGTTAAAATGCTCTCCCGTTTATTAAAAGAACACCAAGCGAAACAAAACGAAAGGAAAGAGTTACAAGAAAGACGAAGACGAGAGGCCATAGCAGCAGCAACATGTTTAACAGAAGCCCTGGTGGATCATCTCAACGTAGGGGTGGCCCAGGCGTACGTCAACCAGCGCAAGCTGGACCACGAGGTGAAGACGTTGCAGGTTCAGGCCAGTCAGTTTGCCAAGCAAACGGCCCAGTGGATCAACATGGTGGAGAACTTCAACCAGGCTTTAAAAGAAATCGGAGACGTGGAGAACTGGGCGCGAAGCATTGAGATGGACATGCGGACGATCGCGACGGCTTTGGAGTACGTGCACAAAGGCCCGGTTCAGCCGGCGTCTTCGTGAGCCGACGGACTCTGATGGTCCGAAACGGACAGAAGCACTGAGGCTTTTCTTCAAGCCGTTGGTGAAACTCGGACAGGACGCTGTTATTTTCCCCCCCAcacattttacCACCCCAAGTTTTCCTTGTACACCTGCACAGATTCACCGTCCAGCTTCTGGCTTGTTTTGACCAACATTTGGCCTCGGCAATGAACGTATAGTACCAGAATTACGAAACCCTGTCccttttttagcttttatagACGTGACGGTGCgctaaaatagattttatgcatttttttgtgggATTTCACGGTTGGCTCAGTTTTACTTAACCCACTAACTACTAACACCGTGACGCTGCATAATCCACTTTTACAACAAGGTCTTTCAGCCTCGGGATTAACATTAAGgacaaacagtaaaacattaaaaactagcCCGAGCAGAATGTGGAGGTTTTTAAATCCCAACACGCCAGGTTATAAATATTCGCTCCGCTCCACTGCATATTTCcagtagttttatttatctttatttctcAAGATCCAAACCGTTTATGGGCAAAAACAGATCACtccatatttaaatgttaaacagttatgttttttattatgctgtCACATCGTTTTATTGCattagctgtatttatttggttgGTTAGttagtttttaatcaaaaaccAAATGCAGCTTGACTTagattaactggaatgcacggtttttttaaaaagcagatgcTCCCCATAATGGTgacgaattgttgaataaagtcattatttaaattttctttttcgtACAAAAACCATTCTCGTAGccattacagttgaaccactgataaGTCTTTCGTACTTTTCTGGACCTCGACCGGGGTTCATCACTCGGCAGTcaatattttaatccaaaatattatCCAAAGTATCGTAGGCTACGTCTGTTATCACAgttatttcataaatgtaagACACGACTGTGTGTGATTGTAAGAAAAATAGGTTTTCACGATTTCTTTGGGGTTGGGTTATGGCACTGTTGTGGTTCAGTTCTGGCTAAAATACGTTGGCCTGAACACATattaatctctctcttttttttgtacaacGAGAAATATAAAATCTCGTTATTACGAACTGAGTGGGATAATGGTGTGCGTTTCAACGCTGCGTTAAGGAAAGAGTTTACCGCCGTTTTCGAAAGAGGTTTAAAGCGGACTTTGTTTACAGTTTCTGGAGCTAAAtgctaattttgttttaaaaagggCGCGCGTGACCAACCCAAAAACTACCAGGGCGATTGCTCAAGTGGAAACTTCActtcacaataaaataacaaaagcttCTTCTATTCGACGACTATTACTACTAATTACAAACGAGTGCACGCAAAAATATAAACTACAGCGAAACAATCATTGCTAGCGGCGAGTAGCCTAACAATGTAAACGGATATAGAAATAAAGCGT
>XM_043223015.1
TTCCTTTTACGCATGGACCCTCCGCGCTTTCCGTATGTTTTGGGACGTTTGTCATGTGAGTCCAGGGATTGTCAAAACGTTTAGAGAAAACCGACTTCATCAAATGAACgtgttttattttccatcaCGATAAATGGTTAAAATGCTCTCCCGTTTATTAAAAGAACACCAAGCGAAACAAAACGAAAGGAAAGAGTTACAAGAAAGACGAAGACGAGAGGCCATAGCAGCAGCAACATGTTTAACAGAAGCCCTGGTGGATCATCTCAACGTAGGGGTGGCCCAGGCGTACGTCAACCAGCGCAAGCTGGACCACGAGGTGAAGACGTTGCAGGTTCAGGCCAGTCAGTTTGCCAAGCAAACGGCCCAGTGGATCAACATGGTGGAGAACTTCAACCAGGCTTTAAAAGAAATCGGAGACGTGGAGAACTGGGCGCGAAGCATTGAGATGGACATGCGGACGATCGCGACGGCTTTGGAGTACGTGCACAAAGGCCCGGTTCAGCCGGCGTCTTCGTGAGCCGACGGACTCTGATGGTCCGAAACGGACAGAAGCACTGAGGCTTTTCTTCAAGCCGTTGGTGAAACTCGGACAGGACGCTGTTATTTTCCCCCCCAGTACGTAACCGATGGAACAGCTGTTTATTTCTCATTTGctccatttttattttcgtATGCTTgcgtaataaaaataatgatctgTTGTGCTAAAA
>XR_006247648.1
TTCCTTTTACGCATGGACCCTCCGCGCTTTCCGTATGTTTTGGGACGTTTGTCATGTGAGTCCAGGGATTGTCAAAACGTTTAGAGAAAACCGACTTCATCAAATGAACgtgttttattttccatcaCGATAAATGGTTAAAATGCTCTCCCGTTTATTAAAAGAACACCAAGCGAAACAAAACGAAAGGAAAGAGTTACAAGAAAGACGAAGACGAGAGGCCATAGCAGCAGCAACATGTTTAACAGAAGCCCTGGTGGATCATCTCAACGTAGGGGTGGCCCAGGCGTACGTCAACCAGCGCAAGCTGGACCACGAGGTGAAGACGTTGCAGGTTCAGGCCAGTCAGTTTGCCAAGCAAACGGCCCAGTGGATCAACATGGTGGAGAACTTCAACCAGGCTTTAAAAGAAATCGGAGACGTGGAGAACTGGGCGCGAAGCATTGAGATGGACATGCGGACGATCGCGACGGCTTTGGAGTACGTGCACAAAGGCCCGGTTCAGCCGGCGTCTTCGTGAGCCGACGGACTCTGATGGTCCGAAACGGACAGAAGCACTGAGGCTTTTCTTCAAGCCGTTGGTGAAACTCGGACAGGACGCTGTTATTTTCCCCCCCAcacattttacCACCCCAAGTTTTCCTTGTACACCTGCACAGATTCACCGTCCAGCTTCTGGCTTGTTTTGACCAACATTTGGCCTCGGCAATGAACGTATAGTACCAGAATTACGAAACCCTGTCccttttttagcttttatagACGTGACGGTGCgctaaaatagattttatgcatttttttgtgggATTTCACGGTTGGCTCAGTTTTACTTAACCCACTAACTACTAACACCGTGACGCTGCATAATCCACTTTTACAACAAGGTCTTTCAGCCTCGGGATTAACATTAAGgacaaacagtaaaacattaaaaactagcCCGAGCAGAATGTGGAGGTTTTTAAATCCCAACACGCCAGGTTATAAATATTCGCTCCGCTCCACTGCATATTTCcagtagttttatttatctttatttctcAAGATCCAAACCGTTTATGGGCAAAAACAGATCACtccatatttaaatgttaaacagttatgttttttattatgctgtCACATCGTTTTATTGCattagctgtatttatttggttgGTTAGttagtttttaatcaaaaaccAAATGCAGCTTGACTTagattaactggaatgcacggtttttttaaaaagcagatgcTCCCCATAATGGTgacgaattgttgaataaagtcattatttaaattttctttttcgtACAAAAACCATTCTCGTAGccattacagttgaaccactgataaGTCTTTCGTACTTTTCTGGACCTCGACCGGGGTTCATCACTCGGCAGTcaatattttaatccaaaatattatCCAAAGTATCGTAGGCTACGTCTGTTATCACAgttatttcataaatgtaagACACGACTGTGTGTGATTGTAAGAAAAATAGGTTTTCACGATTTCTTTGGGGTTGGGTTATGGCACTGTTGTGGTTCAGTTCTGGCTAAAATACGTTGGCCTGAACACATattaatctctctcttttttttgtacaacGAGAAATATAAAATCTCGTTATTACGAACTGAGTGGGATAATGGTGTGCGTTTCAACGCTGCGTTAAGGAAAGAGTTTACCGCCGTTTTCGAAAGAGGTTTAAAGCGGACTTTGTTTACAGTTTCTGGAGCTAAAtgctaattttgttttaaaaagggCGCGCGTGACCAACCCAAAAACTACCAGGGCGATTGCTCAAGTGGAAACTTCActtcacaataaaataacaaaagcttCTTCTATTCGACGACTATTACTACTAATTACAAACGAGTGCACGCAAAAATATAAACTACAGCGAAACAATCATTGCTAGCGGCGAGTAGCCTAACAATGTAAACGGATATAGAAATAAAGCGTCAAAC

Function

symbol description
bloc1s1 Acts upstream of or within pigment granule organization; surfactant homeostasis; and swim bladder development. Predicted to be located in mitochondrial intermembrane space. Predicted to be part of BLOC-1 complex. Is expressed in brain; gut; inner ear; pneumatic duct; and swim bladder. Used to study Hermansky-Pudlak syndrome. Orthologous to human BLOC1S1 (biogenesis of lysosomal organelles complex 1 subunit 1).

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 1

GO: NA

KEGG:

id description
K20185 BLOC1S1; biogenesis of lysosome-related organelles complex 1 subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU222186 False 1939 TUCP 0.42 5 5538561 5542059
XM_043223015.1 False 713 mRNA 0.48 4 5539927 5542080
XR_006247648.1 True 1965 transcript 0.42 5 5538556 5542080

Neighbor

gene id symbol gene type direction distance location
rdh5 rdh5,LOC107573570,LOC107653177,LOC107586996,LOC107745400 coding downstream 1983 5533196 ~ 5536573 (-)
LOC122327491 NA coding downstream 13124 5523238 ~ 5525432 (-)
LOC122327326 NA coding downstream 42477 5492090 ~ 5496079 (-)
LOC122328171 NA coding downstream 47802 5481708 ~ 5490754 (-)
LOC122328170 NA coding downstream 57697 5471936 ~ 5480859 (-)
rbck1 LOC107658397,LOC107745403,LOC107653168,LOC107573567,LOC107586913,LOC107720991 coding upstream 8549 5550629 ~ 5558239 (-)
stab1 stab1,LOC107745410,LOC107658393,LOC107653171,LOC107721010,LOC107593096 coding upstream 64964 5607044 ~ 5634799 (-)
ogna ogn,LOC107658388,LOC107756001,LOC107586921 coding upstream 139511 5681591 ~ 5687034 (-)
omd omd coding upstream 147256 5689336 ~ 5693764 (-)
aspn aspn,LOC107756000,LOC107658386 coding upstream 153569 5695649 ~ 5701467 (-)
G150121 NA non-coding downstream 25589 5508570 ~ 5512967 (-)
G150092 LOC107658400 non-coding downstream 32404 5497941 ~ 5506152 (-)
G150086 LOC107586973,LOC107676140,LOC107698552,LOC107712186,LOC107658401,LOC107676139,LOC107681664 non-coding downstream 68048 5418456 ~ 5470508 (-)
G150093 NA non-coding downstream 84224 5451436 ~ 5454332 (-)
LOC122327610 NA non-coding downstream 228666 5308250 ~ 5309890 (-)
G150161 tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987 non-coding upstream 3188 5545268 ~ 5545768 (-)
G150125 LOC107586915,LOC107745408,LOC107658396,LOC107721006,LOC107593072 non-coding upstream 37390 5579470 ~ 5583041 (-)
G150184 NA non-coding upstream 62077 5604157 ~ 5604418 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding upstream 111971 5654051 ~ 5655376 (-)
G150152 NA non-coding upstream 280849 5822929 ~ 5823913 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other downstream 5747 5527230 ~ 5532809 (-)
LOC122327354 NA other downstream 384700 5145926 ~ 5153856 (-)
LOC122327545 NA other downstream 801696 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 950134 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 1051631 4482821 ~ 4486925 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 96058 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 119661 5661741 ~ 5672809 (-)
LOC122327537 NA other upstream 215926 5758006 ~ 5763982 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other upstream 317267 5859347 ~ 5861332 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other upstream 447417 5989497 ~ 5992758 (-)

Expression


Co-expression Network