G150161 (tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987)


Basic Information

Item Value
gene id G150161
gene name tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5545268 ~ 5545768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222216
CCTGAGATGGTGAGTGGAGAGTTTCTCCACCAGGGCAGTGGCGAGGCGTTCCCCCAGCACCAGCAGGAAGGTCACCACGATGTCGTGGTAGCCCTGGTAGTAGTGCAGCTGGGGGTTCTTGACCAGCACCCGCAGGATGATATCGATCAGCTCCTCCTGAAGGCCTTCCCGCTGCTCGTCTGGAGGAAAGCGTCTGAGGGATCTCTGAACGTCTAGAAGCACTTGGTTGAAGTCCTTGTTGTTGTCTCGATCGACAGGCTCTGGACGGAAAAAATTGATTTACATCTGAACAGAGGTAGGctactttttactttattagCGTAAATTAAAGCGCATATTAAAAAGATGTAAATAAGTACAACAgcattttgaatgtaaataataaagcaagtttgatatatatata

Function

symbol description
tbc1d20 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

NR:

description
PREDICTED: TBC1 domain family member 20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222216 True 406 lncRNA 0.47 2 5545268 5545768

Neighbor

gene id symbol gene type direction distance location
rdh5 rdh5,LOC107573570,LOC107653177,LOC107586996,LOC107745400 coding downstream 8695 5533196 ~ 5536573 (-)
LOC122327491 NA coding downstream 19836 5523238 ~ 5525432 (-)
LOC122327326 NA coding downstream 49189 5492090 ~ 5496079 (-)
LOC122328171 NA coding downstream 54514 5481708 ~ 5490754 (-)
LOC122328170 NA coding downstream 64409 5471936 ~ 5480859 (-)
rbck1 LOC107658397,LOC107745403,LOC107653168,LOC107573567,LOC107586913,LOC107720991 coding upstream 4861 5550629 ~ 5558239 (-)
stab1 stab1,LOC107745410,LOC107658393,LOC107653171,LOC107721010,LOC107593096 coding upstream 61276 5607044 ~ 5634799 (-)
ogna ogn,LOC107658388,LOC107756001,LOC107586921 coding upstream 135823 5681591 ~ 5687034 (-)
omd omd coding upstream 143568 5689336 ~ 5693764 (-)
aspn aspn,LOC107756000,LOC107658386 coding upstream 149881 5695649 ~ 5701467 (-)
G150121 NA non-coding downstream 32301 5508570 ~ 5512967 (-)
G150092 LOC107658400 non-coding downstream 39116 5497941 ~ 5506152 (-)
G150086 LOC107586973,LOC107676140,LOC107698552,LOC107712186,LOC107658401,LOC107676139,LOC107681664 non-coding downstream 74760 5418456 ~ 5470508 (-)
G150093 NA non-coding downstream 90936 5451436 ~ 5454332 (-)
LOC122327610 NA non-coding downstream 235378 5308250 ~ 5309890 (-)
G150125 LOC107586915,LOC107745408,LOC107658396,LOC107721006,LOC107593072 non-coding upstream 33702 5579470 ~ 5583041 (-)
G150184 NA non-coding upstream 58389 5604157 ~ 5604418 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding upstream 108283 5654051 ~ 5655376 (-)
G150152 NA non-coding upstream 277161 5822929 ~ 5823913 (-)
G150232 NA non-coding upstream 305517 5851285 ~ 5851890 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other downstream 3188 5538556 ~ 5542080 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other downstream 12459 5527230 ~ 5532809 (-)
LOC122327354 NA other downstream 391412 5145926 ~ 5153856 (-)
LOC122327545 NA other downstream 808408 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 956846 4585143 ~ 4588422 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 92370 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 115973 5661741 ~ 5672809 (-)
LOC122327537 NA other upstream 212238 5758006 ~ 5763982 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other upstream 313579 5859347 ~ 5861332 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other upstream 443729 5989497 ~ 5992758 (-)

Expression


Co-expression Network