use1 (use1,LOC107756022,LOC107745970,LOC107593088)


Basic Information

Item Value
gene id use1
gene name use1,LOC107756022,LOC107745970,LOC107593088
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5989497 ~ 5992758 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222356
CTTCGAGCGTCAAACATGGCCACGTCCAGGCTCGAGATCAATTTCATCCGGTTGCTGTCGCGCTGCGAATCTCTGGCTTCGGAGAAGAGAAACGAGACGGAATGGAGGCTGGAGAAGTACGTCGGCGCTCTCGAGGAGATGCTTGTTGCCCTTAAAAAGAGTCCCAGCAAACCCACACCAGAAATGCTGACAGACTACAACCGCAAGGTGGACTTCCTCAAGGGTCTCCTGGAGGCGGACAAACTGcCGTCCCCGCGGAGAAGTCTTTAGCCAATCAGTTTCTGGCTCCCGGACGGACGCCCACGATGTCCAGCGAGAGAACGCCGACCAGCAAGACGGTGCACATTCAGAGCAAAGCGCGGTGTGCTGGAGAAATGAGGAAGGAGCTGATGAGCACCGCCGCGTCACGTTCTGGCTCGCTGGATACGGACCTCAGACACAGAAAGTAGGTGCCACCgtctcattgatttatttatttttttgtgtcacTGGTGTCTGCGGCGTTCGGATgcttctgctgtttttttcccgtTCAGGAGCATTCCTGTAGACGAGCGGCAGTCGGCGGCGGAGCTGGACTCGATCCTACAGCATCATCACAACCTGCAGGAGAAGCTGGCCGATGACATGCTGAATCTCGCTCGCAACCTGAAGAACAACACGCTCGCGGCCCAGAACATCATTAAGCAGGACAACCAGactCTCACTCAGTCTATGCGTCAGGCCGACATGAACTTCGAGAAACTGAAGACTGAATCGGAGCGTCTGGAGCAGCACGCCAAGAAGTCCGTCAACTGGTTCCTGTGGCTGATGCTGATCGTGGTCTCCTTCACGTTCATCAGCATGATCCTCTTCATAAGACTGTTCCCGCGACTCCGATGATGTTAGAACCGCTAGGATTGATTTATCCGTTAAGACGCTAGCTATAAGCGGTCCTCTGCTCGACGGCCTCAAATCATTCAGTCAGCTTTCATTCCCGCCGAAATGGACGCTGTTGTCGACgccaaaacgttttttttccgGAAAATCAGCGGTAAGTGTTTGATAACTACAAACTCGGTCAATTAAACGCTTAATCTGACCACAGATGTTATAAATACTAACTCTGActtgtctttttaaagatgcGGTCAGTTTTCCCCCCCGAAGTCTTTTCATTTCCAACAGTTTCGTGTAATCTAGCTATATTTTGACACTATATACGAGCGTTTTGAGACAGTTCCATTCCATCCGGCTTCATCGGgctttctttttcactttctcaCGTACGGGCCGAGCTGTTTTAAGGTCCGGTCGGCTTGTCCAGACTCGCCGCGTCGATCAGGAAATGCTCTGGCAAACAGCAGGAAGCATTTTTGCCGTCGGAAGCACAGATGGCTGCCGTCTTCTTCTCCACCCGGAGAGTGAATGGCTCAAATCTAGCTGCTAACGTTCCCTATACAGCACGTGGACAGAGTATTACGTGGTTTGTTCCCCTGCGGTTCTATCGGTGGATCTTAATGTTCGTCTGAAGCGCTCCGTCGATGATCGGTTGTTTCTCCGTGTGATTATTTTCGCCTGTGTAATCCATTCACGTGAACGCAGACGCTCATTGGCTAGTCCTTGTTTTCTATCAGGTCTGTTCGAAGTTaccttaagaaaaaaaaaaaaagtgttattttaataaaattatttgcaatCCGC
>XM_043223031.1
CTTTTGCCCTCCTCCGCGCGCGGCTTCCGCTTCCGCTTCGAGCGTCAAACATGGCCACGTCCAGGCTCGAGATCAATTTCATCCGGTTGCTGTCGCGCTGCGAATCTCTGGCTTCGGAGAAGAGAAACGAGACGGAATGGAGGCTGGAGAAGTACGTCGGCGCTCTCGAGGAGATGCTTGTTGCCCTTAAAAAGAGTCCCAGCAAACCCACACCAGAAATGCTGACAGACTACAACCGCAAGGTGGACTTCCTCAAGGGTCTCCTGGAGGCGGACAAACTGGTCAGCACTTGCTCGAAGTCTTTAGCCAATCAGTTTCTGGCTCCCGGACGGACGCCCACGATGTCCAGCGAGAGAACGCCGACCAGCAAGACGGTGCACATTCAGAGCAAAGCGCGGTGTGCTGGAGAAATGAGGAAGGAGCTGATGAGCACCGCCGCGTCACGTTCTGGCTCGCTGGATACGGACCTCAGACACAGAAAGAGCATTCCTGTAGACGAGCGGCAGTCGGCGGCGGAGCTGGACTCGATCCTACAGCATCATCACAACCTGCAGGAGAAGCTGGCCGATGACATGCTGAATCTCGCTCGCAACCTGAAGAACAACACGCTCGCGGCCCAGAACATCATTAAGCAGGACAACCAGactCTCACTCAGTCTATGCGTCAGGCCGACATGAACTTCGAGAAACTGAAGACTGAATCGGAGCGTCTGGAGCAGCACGCCAAGAAGTCCGTCAACTGGTTCCTGTGGCTGATGCTGATCGTGGTCTCCTTCACGTTCATCAGCATGATCCTCTTCATAAGACTGTTCCCGCGACTCCGATGATGTTAGAACCGCTAGGATTGATTTATCCGTTAAGACGCTAGCTATAAGCGGTCCTCTGCTCGACGGCCTCAAATCATTCAGTCAGCTTTCATTCCCGCCGAAATGGACGCTGTTGTCGACgccaaaacgttttttttccgGAAAATCAGCGGTAAGTGTTTGATAACTACAAACTCGGTCAATTAAACGCTTAATCTGACCACAGATGTTATAAATACTAACTCTGActtgtctttttaaagatgcGGTCAGTTTTCCCCCCCGAAGTCTTTTCATTTCCAACAGTTTCGTGTAATCTAGCTATATTTTGACACTATATACGAGCGTTTTGAGACAGTTCCATTCCATCCGGCTTCATCGGgctttctttttcactttctcaCGTACGGGCCGAGCTGTTTTAAGGTCCGGTCGGCTTGTCCAGACTCGCCGCGTCGATCAGGAAATGCTCTGGCAAACAGCAGGAAGCATTTTTGCCGTCGGAAGCACAGATGGCTGCCGTCTTCTTCTCCACCCGGAGAGTGAATGGCTCAAATCTAGCTGCTAACGTTCCCTATACAGCACGTGGACAGAGTATTACGTGGTTTGTTCCCCTGCGGTTCTATCGGTGGATCTTAATGTTCGTCTGAAGCGCTCCGTCGATGATCGGTTGTTTCTCCGTGTGATTATTTTCGCCTGTGTAATCCATTCACGTGAACGCAGACGCTCATTGGCTAGTCCTTGTTTTCTATCAGGTCTGTTCGAAGTTaccttaagaaaaaaaaaaaaagtgttattttaataaaattatttgcaatCCGCCTA

Function

symbol description
use1 Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Orthologous to human USE1 (unconventional SNARE in the ER 1).

NR:

description
PREDICTED: vesicle transport protein USE1

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222356 True 1683 TUCP 0.50 7 5989500 5992723
XM_043223031.1 False 1631 mRNA 0.51 8 5989497 5992758

Neighbor

gene id symbol gene type direction distance location
insrb insrb,LOC107695633,LOC107586934,LOC107704428,LOC107593049 coding downstream 5054 5927516 ~ 5984443 (-)
arhgef18b arhgef18,LOC107695632,LOC107593089,LOC107586933,LOC107755984,LOC107704429 coding downstream 67007 5882826 ~ 5922490 (-)
sass6 sass6,LOC107756018,LOC107695611,LOC107731314 coding downstream 142567 5839748 ~ 5846930 (-)
LOC122327539 NA coding downstream 196443 5789815 ~ 5793054 (-)
bap1 bap1,LOC107704441,LOC107695622,LOC107755981 coding downstream 217424 5764038 ~ 5772073 (-)
atp6ap2 atp6ap2,LOC107663666,LOC107745967 coding upstream 18677 6011435 ~ 6016809 (-)
LOC122328173 LOC107708183,LOC107753648,LOC107696926,LOC103909885 coding upstream 103352 6096110 ~ 6097823 (-)
mid1ip1b mid1ip1b,LOC107756028,LOC107663600,LOC107704421,LOC107593044,LOC107745972,LOC107586944 coding upstream 193211 6185969 ~ 6187727 (-)
tspan7b tspan7b,tspan7,LOC107586946,LOC107756029,LOC107745974,LOC107704418,LOC107593043 coding upstream 197316 6190074 ~ 6216614 (-)
slc26a11 slc26a11,LOC107663565,LOC107756030,LOC107745975,LOC107593041,LOC107704413,LOC107586945 coding upstream 229104 6221862 ~ 6231174 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding downstream 134330 5854785 ~ 5855167 (-)
G150233 NA non-coding downstream 135094 5854201 ~ 5854403 (-)
G150232 NA non-coding downstream 137607 5851285 ~ 5851890 (-)
G150152 NA non-coding downstream 165584 5822929 ~ 5823913 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding downstream 334121 5654051 ~ 5655376 (-)
G150271 NA non-coding upstream 152120 6144878 ~ 6155016 (-)
G150273 NA non-coding upstream 164739 6157497 ~ 6183901 (-)
LOC122327580 NA non-coding upstream 320417 6313175 ~ 6314227 (-)
G150216 krt97,krt96,LOC107663680,LOC107745983,LOC107593038,LOC107739339,LOC107580444 non-coding upstream 351381 6344139 ~ 6345150 (-)
G150322 NA non-coding upstream 384929 6377687 ~ 6381972 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other downstream 128165 5859347 ~ 5861332 (-)
LOC122327537 NA other downstream 225515 5758006 ~ 5763982 (-)
nol8 LOC107586918 other downstream 316688 5661741 ~ 5672809 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other downstream 337338 5638138 ~ 5652159 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other downstream 447417 5538556 ~ 5542080 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other upstream 243494 6236252 ~ 6236865 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other upstream 289698 6282456 ~ 6285580 (-)
G150440 r3hdm1,LOC107739334 other upstream 522807 6515565 ~ 6659352 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other upstream 722036 6714794 ~ 6728690 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other upstream 829445 6822203 ~ 6939000 (-)

Expression


Co-expression Network