G150440 (r3hdm1,LOC107739334)


Basic Information

Item Value
gene id G150440
gene name r3hdm1,LOC107739334
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6515565 ~ 6659352 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222663
aaaaagaaaaaaaaaaaaaaaaaaaaaaaagacttgctTATTTGGATTCGGCTACAgtataaattacacatttttggaCGTTGTTTTTTCTGGCTTCGTCGGTGTTCGGCGTAAACAGTGCGTCCCTGCTCAAAGGCACAGGTCAAGAAGTGTTCCCTTGTGTCCCGTCTTCATGTTCATGGGTCAGTTGTAGCGTGTTTGGTTGTTTATTCCCATTCgtttacgaaaaaaaaaaagaggtgttTTGTACAATGTGGCATTTGCGATAAAAAACCCAAACGACATGCTCCGGTTTCAGTTTAGCGATCTATCCGGGGATGAACAGAAAAACAAGCCAAACGTGTCTCATTCGAATTCGTTTCGGTTTCGtgtaaataacaaaaagctAGATAATTTGTCTGAAACCGTGAAAGAACAATTTAACTACAacgttacgttttttttttttttttttcgtttaaaCTAGCGTGAAAACCCCATTCGAAAGTAACAAACCCGTTTTGATCAAGCCGTAGTGGTGCGAAAAAACAAACGAACGAACGAAACCGGGAAAGGTGCGACTGAAATGGCAGGAAGTGAGCCTGAGGCAATGGTGGTGATTGGTGGAGAGCGGGGGAAGGGGCGTGGCCTCACTGAGAGCTGGATCTGGCGAGCGTGTGCTGTTCGTTATGTTCCTTGCTAGTTCTCAGTTTGAATTTGGTGATGGAGCTGCTGAGTTTCTGAAGCACGTTCTGCGCCATGTTTTTCGACGGGAACAAGGCCAGGATGGTGTACGTGGACGCCAGGTCGTGGGGGGGTGGTTTGGGAGGGTCAGAGTTCGTGACGTCCGCTCCCTCCGATCGGCTGGGGGACGAGGGCTTGGGCAGCCATTTTATGAGAGCGCCGACTTTGCTCAGTTCTGCCAGTATAGAGTCCGCTTCCACTCGACTGATGCCGGCCGGAAGGTCCGTCACCTCCAAAACACGGCCGGTG
>TU222664
aaaaagaaaaaaaaaaaaaaaaaaaaaaaagacttgctTATTTGGATTCGGCTACAgtataaattacacatttttggaCGTTGTTTTTTCTGGCTTCGTCGGTGTTCGGCGTAAACAGTGCGTCCCTGCTCAAAGGCACAGGTCAAGAAGTGTTCCCTTGTGTCCCGTCTTCATGTTCATGGGTCAGTTGTAGCGTGTTTGGTTGTTTATTCCCATTCgtttacgaaaaaaaaaaagaggtgttTTGTACAATGTGGCATTTGCGATAAAAAACCCAAACGACATGCTCCGGTTTCAGTTTAGCGATCTATCCGGGGATGAACAGAAAAACAAGCCAAACGTGTCTCATTCGAATTCGTTTCGGTTTCGtgtaaataacaaaaagctAGATAATTTGTCTGAAACCGTGAAAGAACAATTTAACTACAacgttacgttttttttttttttttttttttttttttttttttttttttttttttttttttaaa

Function

symbol description
r3hdm1 Is expressed in forebrain; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human R3HDM1 (R3H domain containing 1).

NR:

description
PREDICTED: R3H domain-containing protein 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222663 True 972 TUCP 0.47 2 6617575 6659352
TU222664 False 491 lncRNA 0.34 4 6515565 6659352

Neighbor

gene id symbol gene type direction distance location
tmem163b tmem163b,tmem163,LOC107739337,LOC107586956,LOC107663488,LOC107745987,LOC107653588,LOC105909211,LOC103367750,LOC107381042 coding downstream 14257 6473781 ~ 6501308 (-)
pth2rb LOC107739359,LOC107587008,LOC107663669,LOC107653586,LOC107746000,LOC107593036 coding downstream 101451 6394583 ~ 6414114 (-)
ptpn4b ptpn4b,LOC107586954,LOC107653584,LOC107593078 coding downstream 140472 6347651 ~ 6375093 (-)
krt222 krt222,LOC107586952,LOC107663524,LOC107745982,LOC107653582,LOC107755987,LOC107593079 coding downstream 179568 6322433 ~ 6335997 (-)
crygs1 crygs1,LOC107756035,LOC107586953,LOC107663530 coding downstream 193479 6318996 ~ 6322086 (-)
adarb1a LOC107687876,LOC107586961,LOC107600973,LOC107754241,LOC107653596,LOC107739329 coding upstream 70430 6729782 ~ 6755792 (-)
slx9 LOC107687875,LOC107754253,LOC107739358,LOC107586963 coding upstream 98933 6758285 ~ 6774697 (-)
plcd4a plcd4a,LOC107739328,LOC107600964,LOC107687884,LOC107586990,LOC103363317 coding upstream 115970 6775322 ~ 6789529 (-)
cnot9 rqcd1,cnot9,LOC107586962,LOC107687874,LOC107600965,LOC107653560 coding upstream 132322 6791674 ~ 6797085 (-)
LOC122328175 LOC107751494,LOC107739353 coding upstream 215107 6874459 ~ 6880468 (-)
G150325 NA non-coding downstream 128798 6384156 ~ 6386767 (-)
G150322 NA non-coding downstream 133593 6377687 ~ 6381972 (-)
G150216 krt97,krt96,LOC107663680,LOC107745983,LOC107593038,LOC107739339,LOC107580444 non-coding downstream 170415 6344139 ~ 6345150 (-)
LOC122327580 NA non-coding downstream 201338 6313175 ~ 6314227 (-)
G150273 NA non-coding downstream 331664 6157497 ~ 6183901 (-)
G150472 NA non-coding upstream 139811 6799163 ~ 6805440 (-)
G150488 NA non-coding upstream 227197 6886549 ~ 6887136 (-)
G150490 LOC107739322,LOC107653601,LOC107586968,LOC107687868,LOC107751479 non-coding upstream 239891 6899243 ~ 6902815 (-)
G150494 NA non-coding upstream 280266 6939618 ~ 6940626 (-)
G150503 NA non-coding upstream 343608 7002960 ~ 7004118 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other downstream 229985 6282456 ~ 6285580 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other downstream 278700 6236252 ~ 6236865 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other downstream 522807 5989497 ~ 5992758 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other downstream 654233 5859347 ~ 5861332 (-)
LOC122327537 NA other downstream 751583 5758006 ~ 5763982 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other upstream 55442 6714794 ~ 6728690 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other upstream 162851 6822203 ~ 6939000 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other upstream 187538 6846890 ~ 6889657 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other upstream 205871 6865223 ~ 6873200 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other upstream 246648 6906000 ~ 6913558 (-)

Expression


Co-expression Network