nab1a (nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950)


Basic Information

Item Value
gene id nab1a
gene name nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6846890 ~ 6889657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222738
TTCCGTCCCACGCGCGGCACCGCCCACGCGAGGATTTGCGTCAAGCCGGCGCGTGGGAGTGAGAGAGCAATGCAGCTTACATCGGAATATCCCCgcacaagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTTCGCGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCAGTCGCGCGCACCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTCTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGG
>TU222739
cagagagagagagagagagagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTTCGCGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCAGTCGCGCGCACCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTCTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGG
>TU222740
gaaagagagagagagagagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTTCGCGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCAGTCGCGCGCACCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTCTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGG
>XM_043222290.1
ACCGTTCAggtcttctctctctttctcgctcggTATTCCGTCCCACGCGCGGCACCGCCCACGCGAGGATTTGCGTCAAGCCGGCGCGTGGGAGTGAGAGAGCAATGCAGCTTACATCGGAATATCCCCgcacaagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTCGCGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCAGTCGCGCGCACCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGGCCAGGGTGCTCCCCGCTGCAAGGCGCTAGCGAGAGTCGTTTCTGGGGAAGCGAGAGCGAGCACAGCCTTTCTCCATCTGGAGCTTTCCCGTGTTCACCCCACGATGCTCTTGGCCTCGATTCTGCCGCCGTCCAGTGCGTGATGGAATGCGTAGAGCGACTAGCCCAGACGTTGCCCAAGAGCGACCCCACAGAAATCAAAGAACACATTCGCGCCAACAAGAAGCTCAGCAAGATGATCGGCCACATCTGCGAGATGAGCGAAGACAGTCCGCAAAAGGAGGTGGAGATTCGGAAATACAGCGCCATCTACGGAAGGTTCGATTCCAAGACGGACGGCCGGCAGCTTACGATGCACGAGCTAACGGTCAACGAAGCATCCGCTCAGCTGTGTATGAAAGATCTGTCGCTGCTGACCCGAAGAGATGAACTTTTCTCGCTGTCCAGGCAGATTTCACGGGAAGTTACCTACAAATACACCCGCAGGAGGTCCCACTGCGGTGATGACGATGAACCGTCTCCCAAGAGGATCAAATCTGAAGATGGTGTGTACGATTTGCAGGAGGCTCTTCATGTTCTTCACACACGTCAAGAAGAAACGGTGAGAGAACAGCTTGCAATGGCCAAATCTAAAGGAGAGGAGACGATCAGACATAGTCTACAGGTACAGCTGGACTCTCTGTTGGCCAAGCAGGTGGAGCTTTTGCGTGACGCTGCCGTCCAAGAGAGACTGAAATCGTTGGACTGGCGGATTCCAACAGCAGCGCTGAAATACCTCGCTCCGACTGCTCAACACTGCAACAGCGGCCTCTCGAATCTCTCTGGCGAGAGACCCCTGAACCTGCGCCTGACAGATGTCCCGTTGGGTAGGCAATTAGCCAATGAGCTCAAACGACATCACAAGCAGAACGCAGAGGAACGGCATCATCACCAACAACAGACGTCCGAAGAGAGAAGGACGGCGGCCACAGaaaaCGGGTCTCAGAAGGAGCCTGGGCTCCTGGAGAAGAAAACCATCAAATCAGAACCAGAGGACTCCAGATAACGTCTTCGGCCTGAAAGTGAAAGCTTGCGTTTTGTTTAGTACTGAAACAGTGTGGCCTTAACAACTGTAAATGCCTAGAGATCCATTTatttagagttttatttttatttctaattttagaacGAAAAACACGAACGTctcgtggtcgttgtacgcacAGAAATCGTCTAAGACCGTATTCGTGCGTCGTTTTTGTACAtagtctgtgtttgtttttccgaTTGCATGTCGCTACTcgtgactatttttatttaaactattcgTTAATCAACGGAAACACTGGAGTTTCGTGGAAAACCTTTGTGCGGTCCTTAGATTAGTCAAGGTTAAACGACGACATGCATCTGTTCGTATCGGTTTGTCGTCGAGGATCAACTTAACGTAAAAGAATACTGAATATGTAGAACTAGCTTTGCGTGTTTTTTGCGGTTTTGCGTCAGTTTAGATATTAGCGCtaggaaaaaaaacgtttgtgtATTTGTTACCAGCTCTAGCCTTATTCTCATCGTCCGATATCGTGTATCTCGCTGTCGTTAGACGTTAACCGTTACATTGTGACTGTGATTcctcggaaaaaaaaaaaagttcgcaaacttttttttttcccaaatgtgGCCGTTTTGTTAGTTAGCTGTGCTAATCTGTCGTTCTGGTCTCTTCTATGCACATTTGTTGCGTGTTACAGTCTTTATCTTGTCTTTGTAAAATCGTTCTAGAAATAAAACCGAACTgg

Function

symbol description
nab1a Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in female organism; rhombomere 3; and rhombomere 5. Orthologous to human NAB1 (NGFI-A binding protein 1).

NR:

description
PREDICTED: NGFI-A-binding protein 1-like isoform X1

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222738 False 621 TUCP 0.59 2 6854770 6856863
TU222739 False 541 TUCP 0.58 3 6854770 6889657
TU222740 False 539 TUCP 0.58 3 6854770 6881469
XM_043222290.1 True 2431 mRNA 0.51 15 6846890 6856898

Neighbor

gene id symbol gene type direction distance location
cnot9 rqcd1,cnot9,LOC107586962,LOC107687874,LOC107600965,LOC107653560 coding downstream 49805 6791674 ~ 6797085 (-)
plcd4a plcd4a,LOC107739328,LOC107600964,LOC107687884,LOC107586990,LOC103363317 coding downstream 57361 6775322 ~ 6789529 (-)
slx9 LOC107687875,LOC107754253,LOC107739358,LOC107586963 coding downstream 72193 6758285 ~ 6774697 (-)
adarb1a LOC107687876,LOC107586961,LOC107600973,LOC107754241,LOC107653596,LOC107739329 coding downstream 91098 6729782 ~ 6755792 (-)
zranb3 zranb3,LOC107687885,LOC107663643,LOC107710929 coding downstream 268463 6524786 ~ 6578427 (-)
LOC122327117 LOC107570603,LOC107690762 coding upstream 37307 6926964 ~ 6929270 (-)
LOC122328177 NA coding upstream 39493 6929150 ~ 6934573 (-)
LOC122327116 nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250 coding upstream 72857 6962514 ~ 6971960 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding upstream 96908 6986565 ~ 6994634 (-)
LOC122327118 LOC107751494,LOC107739353,LOC107653563,LOC107600951 coding upstream 108251 6997908 ~ 7002547 (-)
G150472 NA non-coding downstream 41450 6799163 ~ 6805440 (-)
G150456 NA non-coding downstream 237262 6607789 ~ 6609628 (-)
G150442 NA non-coding downstream 240336 6603055 ~ 6606554 (-)
G150453 NA non-coding downstream 247357 6597904 ~ 6599533 (-)
G150325 NA non-coding downstream 460123 6384156 ~ 6386767 (-)
G150490 LOC107739322,LOC107653601,LOC107586968,LOC107687868,LOC107751479 non-coding upstream 9586 6899243 ~ 6902815 (-)
G150494 NA non-coding upstream 49961 6939618 ~ 6940626 (-)
G150503 NA non-coding upstream 113303 7002960 ~ 7004118 (-)
G150538 NA non-coding upstream 115399 7005056 ~ 7005447 (-)
G150542 NA non-coding upstream 132744 7022401 ~ 7022697 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other downstream 118200 6714794 ~ 6728690 (-)
G150440 r3hdm1,LOC107739334 other downstream 187538 6515565 ~ 6659352 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other downstream 561310 6282456 ~ 6285580 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other downstream 610025 6236252 ~ 6236865 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other downstream 854132 5989497 ~ 5992758 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other upstream 16343 6906000 ~ 6913558 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other upstream 131097 7020754 ~ 7055562 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 720199 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 1396715 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1710693 8600350 ~ 8612744 (-)

Expression


Co-expression Network