LOC122327113 (ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580)


Basic Information

Item Value
gene id LOC122327113
gene name ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7020754 ~ 7055562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222805
AGCGctgtcatttatattaattcatttgtgaATTATGCATCATTTGTCCATTAATGCTTTTTGAGACATAGGGAAATTTCTCCGGTTGGCGGATGCAGTTGATCAGTATTTGAGATGGTCCGTCtggatgtgtttgtatgtgtgcgtgATGTCAGTTTCCATTAATTGGGCTTCATTCAAAATCGGTACCAAAATTGTTTGCGCAACTTGCGATGCAACGTCTGTAAATCACGTAGGAGAACGCAACATATAGCTCTTACGAAACTGATTGTCCTGAAACGCAGTAAATGACTGATGTTTATATGAACAGAAGGTTGggatgcatatatatttatgggGAAAAGCAAGGGCGTTTACTGAAAGCCAGTAATAAAGCAGTTTAGCAGTACGAAAAAAACATGACACTCTTCCGTAGATGTCACTTGTAGTTCTGAACCCTTCTCTCTATTTCATTTTGTGAGATTAGATTTTGGAAAGACGATTCTAGATCAAATTCAACCTACCTTTTAGATGCAGGTGTTCATGTGTATAGTGAATCCAGAAGCAACCCGTTCTTGTGACGAACGCGTAATCATTTGTAAGAGTTAACCAGGTGATTCAGATAAAGGCGTAAAATAAGTGGACTTGTACATGTTGATTTGTctcaattacagtaaaaattgtatacaaacataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaaattaaataaataaaagggcAAACAtgtaaaagatataaaaatttTATCATGGTTGAGTTATACAAACTAGTATAATCTATTACGATTATTAATACGGTTAACTGAAATTATTATGCGTTTGAAGTGAGACCATGTTGTCCAGAACTTAAGCTTTTCAAAAACCAGGTTTGTTTTGTCCGTGAAAAGAGATTCTGGAAGCTGAAATTGTTGAA
>TU222808
GCGCAGTTGGGGGACTTAGCGGAGCAGCtcgggcaaaaaaaaaaaaatgaattagacGCGAAGCTAAAACAAACTATGACCGGATTTGGTTTATTCTGCGCAAATGTAGATCGTAACGTATCGTTTTGGCGTCGGAGGGCTGTTTAAGCGAGCTCGGCGGCACTGAGGATGAAGGACGTGATGAAGAAGACCTGCTGTCACTTCTCGCGCGAATGCTGAAGTCAATTTAGAGACAAATCTCGCTTTTGTCGATTAAAGTTTATTAGACTGATGTTTCGTGCGGCTTGAGGGAGCAGGGACACCGGGTGCCTTTTTCGCCCAGTTTATTGCTAGGatatatttattacactttttgaATTTTAACACGCATGACCCCCTACAAGACGCGGCTTTTTCTTGTTAACTGCTTTTTCGTTTAAAATTggattttttattactttttttttctgtggtaaaTTGTGGGTTGAATTCATTGGAGCTGAAGAGTTGGACCGTCCAGACGCCTTAAGCATGTACGCGGGacgaaaaagaagaaaaccgGTGCAAAGAACGGTGAAGCAGTCCCCGGCCGAAGGGGTGAAGTCTAACCCGTCCAAGCGCCATCGAGATCGGCTGAACTCGGAGTTGGACCGGTTGGCCGGCCTGCTTCCGTTCCCGGAGGAGGTGACGAGCAGCCTGGACAAGCTCTCCATCCTGCGGCTGAGTGTCAGTTATCTGCGCGCTAAGAACTTCTTCTTCGTCGCTTTGAAAAACCACAGCTCCAATGGTTTGTCGGCAAACAACAGTAACCATGACAAGAGTAAAGCAACGGGATTGGTTGAAGGCTGGCTGCATGAGGGAGAGCTCCTGCTACAGGCTCTCAATGGCTTTGTATTGGTGGTCACCGCTGAAGGGATCATTTTCTACTGTTCTCACACCATCCAGGATTACTTGGGATTCCACCAGACAGATGTGATGCATCAAAATGTGTTCGAACTCATTCATACTGAAGACCAGCAGGCCTTCAGATGCAACTTGCACTGGGCCTTGAACCCACCTCCAACCAGCACGCAGACAGAAGAATCCGCAGAAGATGGAGATCCTTCCC
>XM_043222295.1
caaaaaaaagtcCTCTGCTCCCTTTCTGGCTAGACGTGTCCTGAAGTCTAATTATTATTACCCAGACTCGCCAGGTTCCTCCAGTCCGGCATTTaatctcattaatattcataatccCGAGCACGGTTCGCCGAGGCCGACTTCAAACAGCGctgttaatattcatgagcgaGTATTCCTAATTTTGAAGCGCGTCGACCAATCGCAGGAGACGCAAAGCCTGACGTCCCGTATCCTAGGAGATTTTTCCCCTTTGCCTTTAAGCCGTGGCCTCTGATGCTCCGCGCGCGCTCCTGCGCAAATCTGTGCCGGTTGCCTGGTCAACCGAATGCGCGTGCCCTGCAAGCCGGTGTCGGGGGCGCGCAGTTGGGGGACTTAGCGGAGCAGCtcgggcaaaaaaaaaaaaatgaattagacGCGAAGCTAAAACAAACTATGACCGGATTTGGTTTATTCTGCGCAAATGTAGATCGTAACGTATCGTTTTGGCGTCGGAGGGCTGTTTAAGCGAGCTCGGCGGCACTGAGGATGAAGGACGTGATGAAGAAGACCTGCTGTCACTTCTCGCGCGAATGCTGAAGTCAATTTAGAGACAAATCTCGCTTTTGTCGATTAAAGTTTATTAGACTGATGTTTCGTGCGGCTTGAGGGAGCAGGGACACCGGGTGCCTTTTTCGCCCAGTTTATTGCTAGGatatatttattacactttttgaATTTTAACACGCATGACCCCCTACAAGACGCGGCTTTTTCTTGTTAACTGCTTTTTCGTTTAAAATTggattttttattactttttttttctgtggtaaaTTGTGGGTTGAATTCATTGGAGCTGAAGAGTTGGACCGTCCAGACGCCTTAAGCATGTACGCGGGacgaaaaagaagaaaaccgGTGCAAAGAACGGTGAAGCAGTCCCCGGCCGAAGGGGTGAAGTCTAACCCGTCCAAGCGCCATCGAGATCGGCTGAACTCGGAGTTGGACCGGTTGGCCGGCCTGCTTCCGTTCCCGGAGGAGGTGACGAGCAGCCTGGACAAGCTCTCCATCCTGCGGCTGAGTGTCAGTTATCTGCGCGCTAAGAACTTCTTCTTCGTCGCTTTGAAAAACCACAGCTCCAATGGTTTGTCGGCAAACAACAGTAACCATGACAAGAGTAAAGCAACGGGATTGGTTGAAGGCTGGCTGCATGAGGGAGAGCTCCTGCTACAGGCTCTCAATGGCTTTGTATTGGTGGTCACCGCTGAAGGGATCATTTTCTACTGTTCTCACACCATCCAGGATTACTTGGGATTCCACCAGACAGATGTGATGCATCAAAATGTGTTCGAACTCATTCATACTGAAGACCAGCAGGCCTTCAGATGCAACTTGCACTGGGCCTTGAACCCACCTCCAACCAGCACGCAGACAGAAGAATCCGCAGAAGATGGAGATCTCCCAAGTATGTCGCTGGTGACATGCAACCCTGACCAGCTGCCCCCCGAAAACTCCTCTttcctggagagaaattttgtCTGTCGCTTCCGATGCCTCCTAGACAATTCTTCAGGATTCCTGGCCCTGAACCTTCAAGGACGTCTGAAATTCCTGCATGGGCAGAACAGGCGATTGGATGATGGAGGCCAAATGCCGCCCCAGCTCGCCCTATTTGCCATAGCAACACCCCTCCAGCCTCCTTCCATTATGGAGATCCGAACCAAGAACATGATTTTCAGGACCAAACACAAGTTGGACTTCACCCCAATGGCCTGTGATGCCAAGGGTAAAATCGTTCTTGGCTACACCGAGGCAGAGTTGCGAGTTCGAGGTTCTGGGTACCAGTTCATCCATGCAGCTGATATGCTGTATTGTGCTGAGAACCATGTCAGGATGATCAAGACTGGAGAAAGTGGCCTGACTGTGTTTAGACTGCTTACAAAGGACAACCGCTGGAAATGGGTACAAGCTAATGCTAGACTCGTCTACAAAAACGGCAAGCCTGACTACATCATTGCCACCCAGAGGCCACTTGTAGAAGAAGAGGGCGGAGAGCATTTGAGGAAGCGATCTATGCATCTTCCATTTACTTTTGCTACTGGAGAAGCTCTGCTGTACCAAATCAGCTACCCCATGCCAGGCTTCCCCGACACCCTTCAAGGCAAAAGCAAgaacaacaaaaccaaaaagagcAAGGTGGACAAAAGTTCAAAGGATGATGTGGACCCAAGTTCACTTCTGGGAGCCATGATGAGACAAGACGAGTCTGTTTATGTTTGCCAGCCTGCTATGGAGCCTAGAATGTCATTCCACAGTAGTCTCTTCAGTGAGCAAGCAGAGACTAGTaccttctcttcttcttctgcgGAAAATGAAAATTGGAATCCTGTGCAGAATGGCATAACTGCAGTCTCCAAACAGGAGCCATCAAGTTTTGACCCACTACTGGCCACATTAGACTCTCTGTCCCTGGAAAATGAGGAAAGCTGCTCCAACAGTGAGCTATTCACTGCCCTGGAAAACCTTGGGCTCAATGCAGAGGACCTAGAATTGCTACTTCTAGATGAAAGGATGATCCAGGTAGAGATGGAACCAGATTACATCCCATCTTTGAACGATCTTCTAACCAACAACGAAATCCTTTCCTACGTCCAAGACACACTGGAGAACCGGATCGAGAACTCGACAGATACTCAAAACCCTCCCATGGCATTAGATTCTGCTGAACCCCCTGAGCCATGTTCTGCTTCCGAGTCAGCTTCTCAGATTTCTTCCTCCATGCCTGATCCTCACGTTCCTTTCTGGCCACAAAAACAGATAACACCCATAGTTAATCTCTCACAGCGTATGCAGCAACATCTCGATGGCCAGACGGTTTGCCACAAAACCGAGAGCTGGATCCAGGCACAAATACCTCAGGTGTCTACAACAGACTCTGAGACAACTGCATTTACCCAGCATGATACTTTATTGGTAAACTCGGTATCAGCGGTACACAATGGCCACTGGgtccctgaacacacacaagcCAACTTGAACTCTCAATCTGTTGACAAGATAACAGGAATTAGTAAAGTACAATCACAGCAATGGCAGCACAACCAGTTGCTTGACCCATTCcagtataaacaaaaaacagctgtgGGCAGTGATACCCCTCCAAACGGGGTCTACAATGATCCACAGTGGCATGGATACAACTTCACAGACCAGTTGGTCACAAATGGACCTTGTTTTCCCAATGGCCAgatggcacacacacaaacagtgggTACACATGTTGATTACAACATAACCGACAATTCAGGGGTGGAGTTTACAATGAACATCAGTACAGCTGGGGATGCAGGGCAGTTTCAGGGAGCCATGGCCTCGTCTTCGTCCTATCAGCAAGTTTATcagaaacagcagcagcagcagcagcagcagcagccaaaGGTCGCACCCACTTATTACGCCTCCTATACCAAACAGAACTCCTCTCTGGAGCATATCTTGGGATTAGCCCCACCTTCAAACCTTCCCTCATTGACAAATTATAGCTCGGAACTGACCCATGACGCCACCCACAGTAAGaTTGAGACGGGCTTTATACTCAACTCTGCTAGTGTGGCCTACACAGGAAGTTGTTTGGTCCCCAACGGCAATGCAGTGGCCACACCTGGCAACAGTCCCCACCTTCCTGAGCCACTCCCACCCCCAGACCCTCAGACCACTGGTTTCTACCTCTGAACACACTCAATACAGATCCGTCCGCAAAGATGCCATCAATCATGAGAAcactgtcaaataaataatgcaaaaatgcaatttcGAGGTTTGCTCATCCacttgaataaatgaattttaatttaaattaaaatgagccaGACTGACCTCTAGAATATCAGTTGCTGAATACTCCACCCAAGATAGCGctgtcatttatattaattcatttgtgaATTATGCATCATTTGTCCATTAATGCTTTTTGAGACATAGGGAAATTTCTCCGGTTGGCGGATGCAGTTGATCAGTATTTGAGATGGTCCGTCtggatgtgtttgtatgtgtgcgtgATGTCAGTTTCCATTAATTGGGCTTCATTCAAAATCGGTACCAAAATTGTTTGCGCAACTTGCGATGCAACGTCTGTAAATCACGTAGGAGAACGCAACATATAGCTCTTACGAAACTGATTGTCCTGAAACGCAGTAAATGACTGATGTTTATATGAACAGAAGGTTGggatgcatatatatttatgggGAAAAGCAAGGGCGTTTACTGAAAGCCAGTAATAAAGCAGTTTAGCAGTACGAAAAAAACATGACACTCTTCCGTAGATGTCACTTGTAGTTCTGAACCCTTCTCTCTATTTCATTTTGTGAGATTAGATTTTGGAAAGACGATTCTAGATCAAATTCAACCTACCTTTTAGATGCAGGTGTTCATGTGTATAGTGAATCCAGAAGCAACCCGTTCTTGTGACGAACGCGTAATCATTTGTAAGAGTTAACCAGGTGATTCAGATAAAGGCGTAAAATAAGTGGACTTGTACATGTTGATTTGTctcaattacagtaaaaattgtatacaaacataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaaattaaataaataaaagggcAAACAtgtaaaagatataaaaatttTATCATGGTTGAGTTATACAAACTAGTATAATCTATTACGATTATTAATACGGTTAACTGAAATTATTATGCGTTTGAAGTGAGACCATGTTGTCCAGAACTTAAGCTTTTCAAAAACCAGGTTTGTTTTGTCCGTGAAAAGAGATTCTGGAAGCTGAAATTGTTGAATGTGTTTAG

Function

symbol description
ahr1b Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and ligand-activated transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and xenobiotic metabolic process. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in eye. Human ortholog(s) of this gene implicated in retinitis pigmentosa 85. Orthologous to human AHR (aryl hydrocarbon receptor).

NR:

description
PREDICTED: aryl hydrocarbon receptor-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004874 obsolete aryl hydrocarbon receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09093 AHR; aryl hydrocarbon receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU222805 False 921 lncRNA 0.34 1 7020763 7021683
TU222808 False 1087 TUCP 0.48 6 7030307 7055202
XM_043222295.1 True 4825 mRNA 0.46 14 7020754 7055562

Neighbor

gene id symbol gene type direction distance location
LOC122327118 LOC107751494,LOC107739353,LOC107653563,LOC107600951 coding downstream 18207 6997908 ~ 7002547 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding downstream 26120 6986565 ~ 6994634 (-)
LOC122327116 nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250 coding downstream 48794 6962514 ~ 6971960 (-)
LOC122328177 NA coding downstream 86181 6929150 ~ 6934573 (-)
LOC122327117 LOC107570603,LOC107690762 coding downstream 91484 6926964 ~ 6929270 (-)
ahr2 ahr2,LOC107751478,LOC107687867,LOC107600952 coding upstream 2595 7058157 ~ 7106640 (-)
cntnap5b cntnap5b,LOC107751476,LOC107569969,LOC107653604,LOC107739344,LOC107600954,LOC108411251,LOC105905662 coding upstream 179339 7234901 ~ 7283785 (-)
s100b s100b,LOC107687865,LOC107571703,LOC107600981 coding upstream 331495 7387057 ~ 7389184 (-)
aox5 aox5,LOC107600984,LOC107739315,LOC105905663 coding upstream 439099 7494661 ~ 7514404 (-)
LOC122327800 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490 coding upstream 459177 7514739 ~ 7515901 (-)
G150538 NA non-coding downstream 15307 7005056 ~ 7005447 (-)
G150503 NA non-coding downstream 16636 7002960 ~ 7004118 (-)
G150494 NA non-coding downstream 80128 6939618 ~ 6940626 (-)
G150490 LOC107739322,LOC107653601,LOC107586968,LOC107687868,LOC107751479 non-coding downstream 117939 6899243 ~ 6902815 (-)
G150488 NA non-coding downstream 133618 6886549 ~ 6887136 (-)
LOC122327846 NA non-coding upstream 115780 7171342 ~ 7174445 (-)
G150564 NA non-coding upstream 140791 7196353 ~ 7196683 (-)
G150571 NA non-coding upstream 175128 7230690 ~ 7231488 (-)
LOC122327085 NA non-coding upstream 235110 7290672 ~ 7296555 (-)
G150596 NA non-coding upstream 353851 7409413 ~ 7423399 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other downstream 81754 6822203 ~ 6939000 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 107196 6906000 ~ 6913558 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other downstream 131097 6846890 ~ 6889657 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other downstream 147554 6865223 ~ 6873200 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other downstream 292064 6714794 ~ 6728690 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 554294 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 1230810 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1544788 8600350 ~ 8612744 (-)
G151107 tal1,LOC107669848 other upstream 1828559 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 1957986 9013548 ~ 9171931 (-)

Expression


Co-expression Network