LOC122327668 (arl4ca,arl4c,LOC107600967,LOC107739351,LOC105905671,LOC106575223)


Basic Information

Item Value
gene id LOC122327668
gene name arl4ca,arl4c,LOC107600967,LOC107739351,LOC105905671,LOC106575223
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7450248 ~ 7470144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU222918
AGGAGGGTGAGCCCTTTATGGTGAAGGGTGAAACGAGGTCATCTGCCAAACATTTACAGCCCAGATGAACTGTTTATAGAGATACGGAGGCTTTATCACCAagAGATTTCCTTCGTTTGACGATCATCTCATACAGTTTGTCCATTCCTTCATGGAGACCCTCGCCAATGATGGCGCAGGCCGGTTGGACGTGGTACGTGGTGGAGGGACTCAGTTCATGGAGGGCCAAATGTTTCTCGATCTCGCTGACCGTCAGGGATTTAGGGAGGTCCTGCTTGTTGGCGATCACCAGCAGAGGAGTTCCTTGGTTCTCTGCAAATTTGGTGACTTTATGGAGCTCCGTCTTGGCTTCCTCAAGTCGGTCGACATCTACGGAGTCCACCACGTAAATAATACCGTCCGTACAGCGGCTGTAAGATTTCCACAAGGGTCTTAACTTCTCCTGCCCGCCCACGTCCCAGAAGTGACAGCTGATGCCTTTGGCGGTGCCATTGCTGAGTTTGATCTTCTCTGTGTTGAAGCCAATAGTGGGAACAGTGTTGACGAATTCGTTGAACTTTAACCGATACAGTACAGTGGTTTTACCGGCCGAATCCAATCCAAGCATCACAATGTGCAGGGACTGGAATGCAGCAATGTTGGAGAAACCGTTCCCCATCTTACGATGAATGTATAGCAATCAATAAATCACATAGCAGCCTTACATCTACAAGCATCTGAAGACCAGCTTGAGGCTTCCAGGCTCCCGTTTCATTGGTTATTTAGCTTCCAAACTTGATGTCTTGAAAAACCACCAGGTTATGatccagtaaaaaaaacatgcgcAGGAGAGGCACCTCAATATATCAATGGTCCATACTTATCCATGCAAACCCATAACAGCATCCTTGATCTCTATCGAGCATCAACCCAGGCAGGTATGCATGGTCGGTCTGGGAAGGGCGTTGGGTTCTcctcctgttttttttcagatgatATGTTGTGCTGCAGACCGCAGACCTCTGTTTATCTCCTCTGTATGTTTGCGAAGAGCCCGATCAGATTTCTTCCCCACGCAGCATAAATCCGAGACAGTAAGGTCAGGGAGCGAGGCGTTTCCTCAGTGGTGATAAAAACAAGCCGACAGTGAGAGTAGATGGAGGTTTCCCCGCTGTGCTCTGCCTCACActgaagctgc
>XR_006247703.1
ATCAACTTCGTCTCGGTCTTAGGAGCACGGCTTTAAAGTTCCAGAcagatttgtaaatatttaacgAGTTTTAACCTAACAACCTATTAACCTTGAGTGAACCTAACCAGAAGCAAACAAAACTAAAGCTGTTAGCTTGTGGTGCGCTTGATCTATGAGAAGCCTTTGTTGGCCATGTGATGATTTTGTTTGACCTCATCAAACCCTACAGATGAGCGGCTCCAGGTGTTACTGCTGTTTACAAAGACCGAGGAGGGTGAGCCCTTTATGGTGAAGGGTGAAACGAGGTCATCTGCCAAACATTTACAGCCCAGATGAACTGTTTATAGAGATACGGAGGCTTTATCACCAag

Function

symbol description
arl4ca Predicted to enable GTP binding activity. Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including endoderm; median fin fold; pectoral fin bud; pronephric duct; and solid lens vesicle. Orthologous to human ARL4C (ADP ribosylation factor like GTPase 4C).
arl4c Enables alpha-tubulin binding activity. Involved in endocytic recycling. Located in cytosol and plasma membrane.

NR:

description
ADP-ribosylation factor-like 4Ca precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222918 True 1177 lncRNA 0.49 2 7450248 7469574
XR_006247703.1 False 353 lncRNA 0.43 3 7469472 7470144

Neighbor

gene id symbol gene type direction distance location
s100b s100b,LOC107687865,LOC107571703,LOC107600981 coding downstream 61064 7387057 ~ 7389184 (-)
cntnap5b cntnap5b,LOC107751476,LOC107569969,LOC107653604,LOC107739344,LOC107600954,LOC108411251,LOC105905662 coding downstream 166463 7234901 ~ 7283785 (-)
ahr2 ahr2,LOC107751478,LOC107687867,LOC107600952 coding downstream 343608 7058157 ~ 7106640 (-)
LOC122327118 LOC107751494,LOC107739353,LOC107653563,LOC107600951 coding downstream 447701 6997908 ~ 7002547 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding downstream 455614 6986565 ~ 6994634 (-)
aox5 aox5,LOC107600984,LOC107739315,LOC105905663 coding upstream 24517 7494661 ~ 7514404 (-)
LOC122327800 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490 coding upstream 44595 7514739 ~ 7515901 (-)
LOC122327121 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490,LOC107600988 coding upstream 47656 7517800 ~ 7518955 (-)
LOC122327123 LOC107687862,LOC107565490,LOC107751463,LOC107687887,LOC107571702,LOC107739318,LOC107653569,LOC107687863 coding upstream 51574 7521718 ~ 7522892 (-)
LOC122327064 LOC107751463,LOC107571702,LOC107687862,LOC107687887,LOC107739318,LOC107653569,LOC107565490,LOC107600988 coding upstream 54292 7524436 ~ 7525617 (-)
G150596 NA non-coding downstream 26849 7409413 ~ 7423399 (-)
LOC122327085 NA non-coding downstream 153693 7290672 ~ 7296555 (-)
G150571 NA non-coding downstream 218760 7230690 ~ 7231488 (-)
G150564 NA non-coding downstream 253565 7196353 ~ 7196683 (-)
LOC122327846 NA non-coding downstream 275803 7171342 ~ 7174445 (-)
G150626 NA non-coding upstream 13720 7483864 ~ 7484934 (-)
G150628 NA non-coding upstream 16032 7486176 ~ 7498489 (-)
LOC122327778 NA non-coding upstream 154555 7624699 ~ 7628851 (-)
LOC122328071 NA non-coding upstream 176967 7647111 ~ 7652174 (-)
G150706 NA non-coding upstream 388179 7858323 ~ 7866902 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 394686 7020754 ~ 7055562 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other downstream 511248 6822203 ~ 6939000 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 139712 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 816228 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1130206 8600350 ~ 8612744 (-)
G151107 tal1,LOC107669848 other upstream 1413977 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 1543404 9013548 ~ 9171931 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020279 arl4ca coding NC_007133.7 CM002906.2 13977772 ~ 13979393 (+)
grasscarp (Ctenopharyngodon idella) CI01000015_08546297_08546875 ARL4CB, ARL4C, ARL4C.S, ARL4CA coding CI01000015 null 8545531 ~ 8547330 (+)