XLOC_006803 (lgals3a)


Basic Information

Item Value
gene id XLOC_006803
gene name lgals3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36568635 ~ 36582341 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013095
CGGACCTGGCATGTACGGCCCCGGAGGCCCTGGTGCCTTTCCACCAGATGGAGGTCCAGGATATGGAGGAGGAATGTTTCCTCCAGTACCACCAGGATCTTGGGGACAACCAGGAGGAGGCTTTCCTGCTCACCCAGGCCCACCAGGAGGCTACGGTCCCGGGCCCATGGGACCATACGGAGGACCTGCAGCTCCAGGTGGAATGCCATTGCCGTATGATCTCCCACTGCGCGCTGGGATTATGCCACACCTGCTCATCACCATAGTGGGTGAACCAATAATAGGAGGAGACAGGTTCCATGTAGACTTTATGAGGGGGCATGAAGTGGTTTTCCACTTTAACCCTCGCTTCCACGAGAACACCGTCGTACGAAATTCACAGCTCGGGGGTCTCTGGGGTCCTGAGGAGAGGGAAGGAGGATTTCCCTTTGTGCAGGGCAGACAGTTTGAGCTGAAGATCCTGGTGGAGACAGACGGGTTTAAGGTGGCTGTGGACGGTGTTCACCTGCTGGAGTTTGAGCACAGGACAGGCGGGATGGAGGACGTCACTCGTCTGCGCATAGATGGAGACGTGACTCTGTTCAGCGCAGCTCCCAGCAtgatctaacacacacacacaaacacacacacagcagctcaGTAGTGTGGAGGTGACACACTAAATCATTGGTAAACATGGGAAAATATCAGTTATGTCTGAAAGAGTGAACATTTCTAGCAGTTCCTGCATCTCTAATGCAGTTTAGTCAAACACATGATGGGCACATGATCTAAACAAATGAATTACTGTAGAGATATAGAAGATGTTTTGACTCTTCTGAGAGGACGCTGTTATTATCACTCTGTTTGTCCTTATTCTCTCACCCTTCAGAGTGCATTCTACTAGTTACCCTTTTTGCATGTATACCGGAACATGACTGATTTAGTGAAAATCAAATGTGTACTGATGCCCGCGGGGGCCCATAAACTCTAATTCAGGAAACTTCAGAGCAGAGCTGCGACACTGAGCTGGAAAACAGCAGATCTAAATGGCTGAATATTCTTTTGTTTGGAATGAATGTTGGAAAATGTTTATTATTCTAAGGAAAATCATTGAGATGATGGAGGGAAGCAAATTATTTTGTCCAAACGAATGCTGTATTACCCTGATTAAAATGTGCTTGGACATAA
>TCONS_00013096
ACTTCCTGTATAGAGTTTAGTAATTCTGACTTTCGGATCTTTTCGGGCGACGGGACCTGGTACTTCTCAAAAGCCCGAATCCTCGGACCGCAGGCCCCGATCCAGGCGAGgcCATGGCAGACTTTTCGCCATTGCCGTATGATCTCCCACTGCGCGCTGGGATTATGCCACACCTGCTCATCACCATAGTGGGTGAACCAATAATAGGAGGAGACAGGTAAAAACACAGACACTAATGTAACCAACCCTAGCATGACTTCTACATGTCCCACTCTCTTTGTCAAAACACACTTCTCCTTTCTCAGGTTCCATGTAGACTTTATGAGGGGGCATGAAGTGGTTTTCCACTTTAACCCTCGCTTCCACGAGAACACCGTCGTACGAAATTCACAGCTCGGGGGTCTCTGGGGTCCTGAGGAGAGGGAAGGAGGATTTCCCTTTGTGCAGGGCAGACAGTTTGAGCTGAAGATCCTGGTGGAGACAGACGGGTTTAAGGTGGCTGTGGACGGTGTTCACCTGCTGGAGTTTGAGCACAGGACAGGCGGGATGGAGGACGTCACTCGTCTGCGCATAGATGGAGACGTGACTCTGTTCAGCGCAGCTCCCAGCAtgatctaacacacacacacaaacacacacacagcagctcaGTAGTGTGGAGGTGACACACTAAATCATTGGTAAACATGGGAAAATATCAGTTATGTCTGAAAGAGTGAACATTTCTAGCAGTTCCTGCATCTCTAATGCAGTTTAGTCAAACACATGATGGGCACATGATCTAAACAAATGAATTACTGTAGAGATATAGAAGATGTTTTGACTCTTCTGAGAGGACGCTGTTATTATCACTCTGTTTGTCCTTATTC
>TCONS_00013097
ATGGCAGACTTTTCGCTTGCAGACGCAATCCCAGATGATGTTCCTAGTGAAGCATCAAAAAATAAGCACACCAATCCATCAGCTCCTGGAAATGGAGCTCCCCCACCCACTAATCCTGGCTGGCCTGGTGCAGCCCCTGGCGGCCCTCATTTCCCACCTTCTGGAGGCCCTGTCCAACCTGCTGGCTTCCCCCAGACCTGGCCATCTGCCCCTGGATCCTTTCCTCCTGGCCCAGGAGCCCCAGGCCAGTTCCCTGGAGCCCCTGCTGCCCCAGGCCAGTTCCCTGGAGCCCCAGCTGCCCCAGGCGGATACCCACCAGGACCGGGCGTACCAGGACAGTTCCCTCCTAACCCTGGAGCTCCAGGACAGTTCCCCTCTATGCCAGGTCCATCCGGACCTGGCATGTACGGCCCCGGAGGCCCTGGTGCCTTTCCACCAGATGGAGGTCCAGGATATGGAGGAGGAATGTTTCCTCCAGTACCACCAGGATCTTGGGGACAACCAGGAGGAGGCTTTCCTGCTCACCCAGGCCCACCAGGAGGCTACGGTCCCGGGCCCATGGGACCATACGGAGGACCTGCAGCTCCAGGTGGAATGCCATTGCCGTATGATCTCCCACTGCGCGCTGGGATTATGCCACACCTGCTCATCACCATAGTGGGTGAACCAATAATAGGAGGAGACAGGTTCCATGTAGACTTTATGAGGGGGCATGAAGTGGTTTTCCACTTTAACCCTCGCTTCCACGAGAACACCGTCGTACGAAATTCACAGCTCGGGGGTCTCTGGGGTCCTGAGGAGAGGGAAGGAGGATTTCCCTTTGTGCAGGGCAGACAGTTTGAGCTGAAGATCCTGGTGGAGACAGACGGGTTTAAGGTGGCTGTGGACGGTGTTCACCTGCTGGAGTTTGAGCACAGGACAGGCGGGATGGAGGACGTCACTCGTCTGCGCATAGATGGAGACGTGACTCTGTTCAGCGCAGCTCCCAGCAtgatctaa
>TCONS_00013098
GTTGCTCACGATGTTGTTAAACACGCCGTTGAAAAGCCTCAATGTTCCAGTTATCACCTCACTTCCTGTATAGAGTTTAGTAATTCTGACTTTCGGATCTTTTCGGGCGACGGGACCTGGTACTTCTCAAAAGCCCGAATCCTCGGACCGCAGGCCCCGATCCAGGCGAGgcCATGGCAGACTTTTCGCTTGCAGACGCAATCCCAGATGATGTTCCTAGTGAAGCATCAAAAAATAAGCACACCAATCCATCAGCTCCTGGAAATGGAGCTCCCCCACCCACTAATCCTGGCTGGCCTGGTGCAGCCCCTGGCGGCCCTCATTTCCCACCTTCTGGAGGCCCTGTCCAACCTGCTGGCTTCCCCCAGACCTGGCCATCTGCCCCTGGATCCTTTCCTCCTGGCCCAGGAGCCCCAGGCCAGTTCCCTGGAGCCCCTGCTGCCCCAGGCCAGTTCCCTGGAGCCCCAGCTGCCCCAGGCGGATACCCACCAGGACCGGGCGTACCAGGACAGTTCCCTCCTAACCCTGGAGCTCCAGGACAGTTCCCCTCTATGCCAGGTCAGTTCCCACCAGGTGGGGCACCCATGCCATATCCTGTTCCTGGACAATTCCCCTCCCCACCTGGGGCTCCACAGGGTCCCAATCCAAACGTGCCTTACCCACCAGGTCCATCCGGACCTGGCATGTACGGCCCCGGAGGCCCTGGTGCCTTTCCACCAGATGGAGGTCCAGGATATGGAGGAGGAATGTTTCCTCCAGTACCACCAGGATCTTGGGGACAACCAGGAGGAGGCTTTCCTGCTCACCCAGGCCCACCAGGAGGCTACGGTCCCGGGCCCATGGGACCATACGGAGGACCTGCAGCTCCAGGTGGAATGCCACTACATAGACCTCCATATTATTGAGCACAATGAACAGCTCAAGCAGTCACAGGAGGAGGACGCCATCGCAGACCCCAGTTAACATCCAGTCAGAGACATTTAACACCTAGATCACATTCATATATTTGCATATCAGCtttacaaacaaatgcacatattTAATTACTGCACATTACACTCGTCattcttattactattattgcAGATCATTGTTTTAGTGATGCAACAATCTAAATCTATATTGTGATTAAAGGATTTGTATGggctgtatttattatttgtttctggTAATGCTGAGAGGTTGAagttgttatatttatatatgagagAGTGATATTATACTGTATGAGAGCTTAAACCTATGACAATCAATGACAAATaaatttcagcatcattacttca

Function

symbol description
lgals3a Predicted to enable IgE binding activity and laminin binding activity. Predicted to be involved in several processes, including leukocyte chemotaxis; negative regulation of extrinsic apoptotic signaling pathway; and positive regulation of calcium ion import. Predicted to act upstream of or within RNA splicing; innate immune response; and mRNA processing. Predicted to be located in extracellular region. Predicted to be part of spliceosomal complex. Predicted to be active in several cellular components, including extracellular space; immunological synapse; and nucleus. Human ortholog(s) of this gene implicated in asthma. Orthologous to human LGALS3 (galectin 3).

GO:

id name namespace
GO:2001237 negative regulation of extrinsic apoptotic signaling pathway biological_process
GO:0090280 positive regulation of calcium ion import biological_process
GO:0002548 monocyte chemotaxis biological_process
GO:0050918 positive chemotaxis biological_process
GO:0045806 negative regulation of endocytosis biological_process
GO:0048245 eosinophil chemotaxis biological_process
GO:0048246 macrophage chemotaxis biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0001772 immunological synapse cellular_component
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019863 IgE binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0043236 laminin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7667 Predicted to enable IgE binding activity and laminin binding activity. Predicted to be involved in several processes, including leukocyte chemotaxis; negative regulation of extrinsic apoptotic signaling pathway; and positive regulation of calcium ion import. Predicted to act upstream of or within RNA splicing; innate immune response; and mRNA processing. Predicted to be located in extracellular region. Predicted to be part of spliceosomal complex. Predicted to be active in several cellular components, including extracellular space; immunological synapse; and nucleus. Human ortholog(s) of this gene implicated in asthma. Orthologous to human LGALS3 (galectin 3).

Ensembl:

ensembl_id ENSDARG00000077850

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013095 False 1170 mRNA 0.48 4 36568635 36579086
TCONS_00013096 False 869 lncRNA 0.48 4 36568947 36582281
TCONS_00013097 False 999 mRNA 0.59 6 36569198 36581875
TCONS_00013098 True 1283 mRNA 0.52 4 36578225 36582341

Neighbor

gene id symbol gene type direction distance location
XLOC_006802 synj2bp coding downstream 2375 36557205 ~ 36566260 (-)
XLOC_006801 FP103009.1 coding downstream 23377 36537426 ~ 36545258 (-)
XLOC_006800 srsf5a coding downstream 33507 36526806 ~ 36535128 (-)
XLOC_006799 pacs2 coding downstream 42653 36446187 ~ 36525982 (-)
XLOC_006798 dcaf5 coding downstream 129574 36406274 ~ 36439061 (-)
XLOC_006804 BX927407.1 coding upstream 5429 36587770 ~ 36612159 (-)
XLOC_006805 cdkn3 coding upstream 30589 36612930 ~ 36621926 (-)
XLOC_006806 sos2 coding upstream 56614 36638955 ~ 36663358 (-)
XLOC_006807 l2hgdh coding upstream 84321 36666662 ~ 36680531 (-)
XLOC_006808 cdkl1 coding upstream 110811 36693152 ~ 36703164 (-)
XLOC_006471 BX537274.2 misc downstream 26303730 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35742410 825904 ~ 826225 (-)
XLOC_006797 CR361558.1 non-coding downstream 169260 36399260 ~ 36399375 (-)
XLOC_006785 BX510990.1 non-coding downstream 606169 35962350 ~ 35962466 (-)
XLOC_006784 NA non-coding downstream 643151 35925042 ~ 35925484 (-)
XLOC_006779 BX663524.1 non-coding downstream 976258 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 1197951 35370569 ~ 35370684 (-)
XLOC_006814 NA non-coding upstream 413292 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 427471 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 527871 37110212 ~ 37110536 (-)
XLOC_006819 AL845493.1 non-coding upstream 596261 37178602 ~ 37178716 (-)

Expression


Co-expression Network