pdzk1ip1


Basic Information

Item Value
gene id pdzk1ip1
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8890622 ~ 8892199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU223378
GGTTAGAGGAAGGATACAGGTCTTCGACTCGAGCAGCTGTTTCGATACGTTAGCGGGTGTGAAGAGGACGAACATGGGGAAACCGGTGGCTGTGTTTTACTGGCTTCTGCTCGCCCTGGGACCGGCCGCGGCTCAAGCAGAGAAAGCAGAGCAAGCCCTCCCAAACTGGCTCACGGGGATCATCGCCGTCGGAGTCTTCCTCTTTCTGATCTTCGTCGCCTTCCTTGTAAACAAAGCCTGGTGCGAAACTCCAAGgagcatCGACAACCCTAAAGTGCTTGATCATCAGACCGATGAAAAAGTGACCGAGATGTGATGAAGGAAACGTCCGCATTCGGCTGACTCAGCGCGCCATGTTAACCTTGTTTCTTGTTGTAATAAGTTAGAAATTTAATAGCTGATGCAGGTTATCTTTTACCAAAGGTTAGCAGTgatttttgattaagtttttttttacattttattacacattaattCTAGTTCCTTTTAAAGggcatgttgttgttgttgttgtaacaATTTGTGAACACTTTAATATATTAGACATTCAGTATATCAAGTATTCAATACTTGTTGTGCAAACTTCtttaagcaatattaaaaaaaaaaaatatatatatttaataatatgaataaaatcaaatatgctACCTTTCAAA
>XM_043222327.1
TTGAAATTCAGATAGTTTCCTGGTTAGAGGAAGGATACAGGTCTTCGACTCGAGCAGCTGTTTCGATACGTTAGCGGGTGTGAAGAGGACGAACATGGGGAAACCGGTGGCTGTGTTTTACTGGCTTCTGCTCGCCCTGGGACCGGCCGCGGCTCAAGCAGAGAAAGCAGAGCAAGCCCTCCCAAACTGGCTCACGGGGATCATCGCCGTCGGAGTCTTCCTCTTTCTGATCTTCGTCGCCTTCCTTGTAAACAAAGCCTGGTGCGAAACTCCAAGgagcatCGACAACCCTAAAGTGCTTGATCATCAGACCGATGAAAAAGTGACCGAGATGTGATGAAGGAAACGTCCGCATTCGGCTGACTCAGCGCGCCATGTTAACCTTGTTTCTTGTTGTAATAAGTTAGAAATTTAATAGCTGATGCAGGTTATCTTTTACCAAAGGTTAGCAGTgatttttgattaagtttttttttacattttattacacattaattCTAGTTCCTTTTAAAGggcatgttgttgttgttgttgtaacaATTTGTGAACACTTTAATATATTAGACATTCAGTATATCAAGTATTCAATACTTGTTGTGCAAACTTCtttaagcaatattaaaaaaaaaaaatatatatatttaataatatgaataaaatcaaatatgctACCTTTCAAAAGTCTTGGTTTGGTAGAACTTTGTtgtaggctgcatttatttgatcaaatacacaataatactgcaaaatattattacaatttaaaataacttgtatTAAATTtggaattgttttaaa

Function

NR:

description
PDZK1-interacting protein 1-like

GO:

id name namespace
GO:0046549 retinal cone cell development biological_process
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0042670 retinal cone cell differentiation biological_process

KEGG:

id description
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko04977 Vitamin digestion and absorption
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU223378 False 659 TUCP 0.40 3 8890643 8892081
XM_043222327.1 True 798 mRNA 0.38 3 8890622 8892199

Neighbor

gene id symbol gene type direction distance location
tal1 tal1,LOC107669848 coding upstream 4194 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 30553 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 43566 8828910 ~ 8847056 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding upstream 71028 8813432 ~ 8819594 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding upstream 77756 8807166 ~ 8812866 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding downstream 103772 8995971 ~ 9004905 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 305825 9198024 ~ 9223536 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding downstream 331611 9223810 ~ 9227301 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 336209 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 343900 9236099 ~ 9248034 (+)
G150928 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 35371 8854822 ~ 8855251 (+)
G150916 NA non-coding upstream 95336 8794161 ~ 8795286 (+)
G150886 NA non-coding upstream 116987 8772636 ~ 8773635 (+)
G150860 NA non-coding upstream 323309 8566961 ~ 8567313 (+)
G150858 NA non-coding upstream 329449 8560402 ~ 8561173 (+)
G150936 NA non-coding downstream 365 8892564 ~ 8894757 (+)
G150937 NA non-coding downstream 6021 8898220 ~ 8898434 (+)
G150938 NA non-coding downstream 6847 8899046 ~ 8899466 (+)
G150939 NA non-coding downstream 7377 8899576 ~ 8900972 (+)
G150941 patj,inadl,LOC107715056,LOC107731530,LOC107669802 non-coding downstream 10875 8903074 ~ 8905934 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 273017 8614289 ~ 8617605 (+)
G150756 NA other upstream 722350 8167449 ~ 8168272 (+)
G150369 NA other upstream 2181731 6708488 ~ 6708891 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other upstream 2380166 6502914 ~ 6510456 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other upstream 2651265 6236117 ~ 6239357 (+)
G150940 NA other downstream 8944 8901143 ~ 8902311 (+)
G150945 NA other downstream 27080 8919279 ~ 8919780 (+)
G150946 NA other downstream 29499 8921698 ~ 8921967 (+)
G150965 NA other downstream 95987 8988186 ~ 8988691 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 562639 9454838 ~ 9530165 (+)

Expression


Co-expression Network