G150939


Basic Information

Item Value
gene id G150939
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8899576 ~ 8900972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU223382
TGGAGTAGGATGGTGCCGTAAGCATTCTTCAGCATATTTACGACGTCCCCATGAGTCAAGCCATCCAGAGACTGAGAGTTGATGCTGACAATCCTATCACCTACCTAAGAGAGACGCATTAAGGCaaaaaatgacttgaaattCATATTCACACTGATACGAACCCGATTCCCAGCAGTGCGCTTCACACCCAAACCACTGTATAATGCTTAATCAATAACTCTCGGCACAGGACGAAATGAACGACAGCAAAATTAGGAAAGGCAAGGATGCTGTACTTTGAGGCGATGTGTCCTGGCAGCCACACCGTTGGCCTGGATCATAGCGATGAAGATGGGGATGTCGCCCAGAGGACTGCCCTTACCGCCCGCTATACTGACACCCAAAGCATCGGTGGGACCCTGAGAGAGCGAGACAAGGGTGCAATCAAATTCGACCACCGAGCACCGTAGCTAAACCTACGCTGCGGTGTTCTGAGTTAAATGGTCTTACCCGTGTGATCTCCACTGTCCGGACACCTGGCTCCGTCGCTGGGGATATAAAATCATCACATTAACTTTTGATTTGCAAACCTTTAAAAGGCTAAAGGGATAATCGCCCCAAAAATTAATAgtctcgtgtcgttccaaaccttcTAGACGCAAAAATGATATTTCTCTATATTTAGCTGACCCCTCATAGACGGCAACAAAATTGAGACATTCAAGGACATTGCTAAAACAGTCAAAGTATTCTTGTAGTATTTTGCGTCCAGCGTAGACAGCTTCTAGAGCGACGCGACAGCTGTTGTGAAAATGAtcagtacacacatataatgaACAGTATACTAAACACAGGGGATGCACACAGTACCATCCAGCCCTAAGTGGTACTGTTGGCTCAGGGTACTCAACAAAGACTGGCATGGAAGAGAAGAAATGCTGAATGAAGTCgtcgtttttgttttctttgcacgcAAGTATTCCTGTAGCTTCATAACGTCACAGTTAAACCACAGATGTCACACGGACCATTTTAATGACGTCCTCACTACCTTTTTGGGCCTTGAAGGTGTAGGTTGCGTTGCTCTTTAAGCTCTCggattacataaaaaaaacaaaaaaaacaatttgttttCCGAAGGtctcacaggtttggaacgacatgagagcGAGTGATTAATGCCAGAATGTTA
>TU223383
TGGAGTAGGATGGTGCCGTAAGCATTCTTCAGCATATTTACGACGTCCCCATGAGTCAAGCCATCCAGAGACTGAGAGTTGATGCTGACAATCCTATCACCTACCTAAGAGAGACGCATTAAGGCaaaaaatgacttgaaattCATATTCACACTGATACGAACCCGATTCCCAGCAGTGCGCTTCACACCCAAACCACTGTATAATGCTTAATCAATAACTCTCGGCACAGGACGAAATGAACGACAGCAAAATTAGGAAAGGCAAGGATGCTGTACTTTGAGGCGATGTGTCCTGGCAGCCACACCGTTGGCCTGGATCATAGCGATGAAGATGGGGATGTCGCCCAGAGGACTGCCCTTACCGCCCGCTATACTGACACCCAAAGCATCGGTGG
>TU223384
atggatggatgcgcTTTTTTAAGCTTCAGAAtctcactgccattataaagcttggaagagtggggacattttttaataaaacttcgATCAcattcgtctgaaagaaaaaaaattcatatacacctaggatggcttgagggtgagtaaaaccgtggggtaattttcttttttgggtaaaGCATCCCTTAACTAACAAAGAATGTAATTGAGTTGAATGCGTACCTGGAGTAGGATGGTGCCGTAAGCATTCTTCAGCATATTTACGACGTCCCCATGAGTCAAGCCATCCAGAGACTGAGAGTTGATGCTGACAATCCTATCACCTACCTAAGAGAGACGCATTAAGGCaaaaaatgacttgaaattCATATTCACACTGATACGAACCCGATTCCCAGCAGTGCGCTTCACACCCAAACCACTGTATAATGCTTAATCAATAACTCTCGGCACAGGACGAAATGAACGACAGCAAAATTAGGAAAGGCAAGGATGCTGTACTTTGAGGCGATGTGTCCTGGCAGCCACACCGTTGGCCTGGATCATAGCGATGAAGATGGGGATGTCGCCCAGAGGACTGCCCTTACCGCCCGCTATACTGACACCCAAAGCATCGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223382 True 1174 lncRNA 0.45 1 8899799 8900972
TU223383 False 397 lncRNA 0.49 1 8899799 8900195
TU223384 False 620 lncRNA 0.45 1 8899576 8900195

Neighbor

gene id symbol gene type direction distance location
tal1 tal1,LOC107669848 coding upstream 13148 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 39507 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 52520 8828910 ~ 8847056 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding upstream 79982 8813432 ~ 8819594 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding upstream 86710 8807166 ~ 8812866 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding downstream 94999 8995971 ~ 9004905 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 297052 9198024 ~ 9223536 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding downstream 322838 9223810 ~ 9227301 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 327436 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 335127 9236099 ~ 9248034 (+)
G150938 NA non-coding upstream 110 8899046 ~ 8899466 (+)
G150937 NA non-coding upstream 1142 8898220 ~ 8898434 (+)
G150936 NA non-coding upstream 4819 8892564 ~ 8894757 (+)
G150928 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 44325 8854822 ~ 8855251 (+)
G150916 NA non-coding upstream 104290 8794161 ~ 8795286 (+)
G150941 patj,inadl,LOC107715056,LOC107731530,LOC107669802 non-coding downstream 2102 8903074 ~ 8905934 (+)
G150942 NA non-coding downstream 6425 8907397 ~ 8908479 (+)
G150943 NA non-coding downstream 8958 8909930 ~ 8910130 (+)
G150944 NA non-coding downstream 17091 8918063 ~ 8918665 (+)
G150948 NA non-coding downstream 30507 8931479 ~ 8932019 (+)
pdzk1ip1 NA other upstream 7377 8890622 ~ 8892199 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 281971 8614289 ~ 8617605 (+)
G150756 NA other upstream 731304 8167449 ~ 8168272 (+)
G150369 NA other upstream 2190685 6708488 ~ 6708891 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other upstream 2389120 6502914 ~ 6510456 (+)
G150940 NA other downstream 171 8901143 ~ 8902311 (+)
G150945 NA other downstream 18307 8919279 ~ 8919780 (+)
G150946 NA other downstream 20726 8921698 ~ 8921967 (+)
G150965 NA other downstream 87214 8988186 ~ 8988691 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 553866 9454838 ~ 9530165 (+)

Expression


Co-expression Network