G150941 (patj,inadl,LOC107715056,LOC107731530,LOC107669802)


Basic Information

Item Value
gene id G150941
gene name patj,inadl,LOC107715056,LOC107731530,LOC107669802
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8903074 ~ 8905934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU223387
TTTTTCTCTTGTTTATAACAGTGTAAGTACTCAATTTAActtgctgttattattttaagacaAAAGGTGGAGGTAATAATGCAACTCTATAAGTTCATATTTTTGGGAAACGCTAACGTTAATCATATGTCAGAGAGCTGTTAAAGACCTGGACGTCACTTGAATTTTAACGTTTAAAAACTTACAAAAGGGTTGGGCTGGATCTTGTTTATTATCATTCAAAGCACATTTTAAGGCATTGCTGATATGCTGATATCTAACTTAACCacaacaaataattaaactaaCGCTGAAGCTACTGTTACAAGAGACCAAAACCGttaaaagaaatgtcttttaacTATatctaaacaaattaaatgagcGGTAGGGATGccacatttaatttgattgtaCAACCTGTAAACTGACATCCATATATCTGTCAATCATAACCCGCTTTTCAaagcagaaaattaaatatgggAGCCTACCCTGATTATTATAATTGCAGGGCATGTGAAATAAGGCGTTTATATCACTTGACATGAATTATGCGGTCCTACATAAACACCCACGAATGCTTCAAGCTTTTTTTTGGCAAACATTTGTTGATAAAATCTCCTTAAAATTCATTACTGTGATTGATTGCAGACAAAACCAAATGTTTAAAGGAGAGTCCAGGCACTGTTTATGCCACTAAATAGACGATCAGACAGTGACTCCTAGTGGAGGAATCCCGCAGCTGCTGCTTGAACTTCACATCATGAACTTGTTGTAAACTGGGCTTTGGGTTTTAGGAGCTAGGTGGAGCTCACCTTGAGAATGGCGGCAACGGTCTCCTGTGAGGCCTGTCTCATGTCCTCTCCATCCACAGACAGGATCTGATCCCCCTGCATCAGTCTGCCGTCCAGATCAGCTGCTCCACCCTTCACCACATCCGAGATAAATACACCCTTACCGTTCCTGAAGAGACAGGGAAGCAGAAAGTTAGGCTTTAGGCCCAGTCCGCGTCCGGTTCTCTTCTGAAGCTCAACACGAAACACGTCAAGGTTCTCCTCGTCCCTGTATTGTGCCTCGTCGCGCAGGACCGTCAGCCGAACTTTGGCCGGTGTCTGCCGGAGAGCAGCTATTGCATCTTCATGAGCCACGCTGCGCAGATCTACTCCATTCACCTGCAGGGGGCGCCAGAGAACAGCGTCTCCTTAAACAGCTACCCCAAGTTTAAGctattaaaaaattactttcaatTAATATAACAGAAACGATAGATCGACACAGAATTACAAAACGTAAAATGAACTAgcattacaaattacaaattaaaaagaaaacaaaagcattaaaataaaagctatattCACAGCGCATATGGAGAGAACGAGCTCAAGCTACTCCCCGTCCAGAAGATGGCACTATTGTCAAAGTTAAACACAGAGAAGCGCCGCTCAGATCTGTAGTAACTCACAAGAGTACAGAGCCTCCAACCAAAGCCAGATTTCCATTTAGCTGAAGGCAGACCAGCTGTCAGTGACATTAcaacacgctctctctctcacaaacaaaCCTCCAGAATCTGATCCCCGGCCCAGAGACGGCCGTCCCGCGCCGCCGCCCCCTCCTCGTACACTTCATGAATCACTATGGCATCCTgagaagaggagaaaagagaggaaccaaaaagagaaacaaattcatattaaatcCAACACAATACACTCAAACACAAAGTCTTCTGAAATCATAGATCACagatttgtgtgaaaaaaa
>TU223389
TTTTTCTCTTGTTTATAACAGTGTAAGTACTCAATTTAActtgctgttattattttaagacaAAAGGTGGAGGTAATAATGCAACTCTATAAGTTCATATTTTTGGGAAACGCTAACGTTAATCATATGTCAGAGAGCTGTTAAAGACCTGGACGTCACTTGAATTTTAACGTTTAAAAACTTACAAAAGGGTTGGGCTGGATCTTGTTTATTATCATTCAAAGCACATTTTAAGGCATTGCTGATATGCTGATATCTAACTTAACCacaacaaataattaaactaaCGCTGAAGCTACTGTTACAAGAGACCAAAACCGttaaaagaaatgtcttttaacTATatctaaacaaattaaatgagcGGTAGGGATGccacatttaatttgattgtaCAACCTGTAAACTGACATCCATATATCTGTCAATCATAACCCGCTTTTCAaagcagaaaattaaatatgggAGCCTACCCTGATTATTATAATTGCAGGGCATGTGAAATAAGGCGTTTATATCACTTGACATGAATTATGCGGTCCTACATAAACACCCACGAATGCTTCAAGCTTTTTTTTGGCAAACATTTGTTGATAAAATCTCCTTAAAATTCATTACTGTGATTGATTGCAGACAAAACCAAATGTTTAAAGGAGAGTCCAGGCACTGTTTATGCCACTAAATAGACGATCAGACAGTGACTCCTAGTGGAGGAATCCCGCAGCTGCTGCTTGAACTTCACATCATGAACTTGTTGTAAACTGGGCTTTGGGTTTTAGGAGCTAGGTGGAGCTCACCTTGAGAATGGCGGCAACGGTCTCCTGTGAGGCCTGTCTCATGTCCTCTCCATCCACAGACAGGATCTGATCCCCCTGCATCAGTCTGCCGTCCAGATCAGCTGCTCCACCCTTCACCACATCCGAGATAAATACACCCTTACCGTTCCTGAAGAGACAGGGAAGCAGAAAGTTAGGCTTTAGGCCCAGTCCGCGTCCGGTTCTCTTCTGAAGCTCAACACGAAACACGTCAAGGTTCTCCTCGTCCCTGTATTGTGCCTCGTCGCGCAGGACCGTCAGCCGAACTTTGGCCGGTGTCTGCCGGAGAGCAGCTATTGCATCTTCATGAGCCACGCTGCGCAGATCTACTCCATTCACCTGCAGGGGGCGCCAGAGAACAGCGTCTCCTTAAACAGCTACCCCAAGTTTAAGctattaaaaaattactttcaatTAATATAACAGAAACGATAGATCGACACAGAATTACAAAACGTAAAATGAACTAgcattacaaattacaaattaaaaagaaaacaaaagcattaaaataaaagctatattCACAGCGCATATGGAGAGAACGAGCTCAAGCTACTCCCCGTCCAGAAGATGGCACTATTGTCAAAGTTAAACACAGAGAAGCGCCGCTCAGATCTGTAGTAACTCACAAGAGTACAGAGCCTCCAACCAAAGCCAGATTTCCATTTAGCTGAAGGCAGACCAGCTGTCAGTGACATTAcaacacgctctctctctcacaaacaaaCCTCCAGAATCTGATCCCCGGCCCAGAGACGGCCGTCCCGCGCCGCCGCCCCCTCCTCGTACACTTCATGAATCACTATGGCATCCTgagaagaggagaaaagagaggaaccaaaaagagaaacaaattcatattaaatcCAACACAATACACTCAAACACAAAGTCTTCTGAAATCATAGATCACagatttgtgtgaaaaaaataataaaggttCTAAGAGATAATTAACggtaatattatgtttatttttcattgttgtctaagattttgtaaattttattagtgcttttgttttctatttctacacagccatttaatattattttagttttagtaattttaaattttcagtcatttttagtGCTTTAGAACTAACTTTTCAGTtgattacac
>TU223390
GCTGCTTGAACTTCACATCATGAACTTGTTGTAAACTGGGCTTTGGGTTTTAGGAGCTAGGTGGAGCTCACCTTGAGAATGGCGGCAACGGTCTCCTGTGAGGCCTGTCTCATGTCCTCTCCATCCACAGACAGGATCTGATCCCCCTGCATCAGTCTGCCGTCCAGATCAGCTGCTCCACCCTTCACCACATCCGAGATAAATACACCCTTACCGTTCCTGAAGAGACAGGGAAGCAGAAAGTTAGGCTTTAGGCCCAGTCCGCGTCCGGTTCTCTTCTGAAGCTCAACACGAAACACGTCAAGGTTCTCCTCGTCCCTGTATTGTGCCTCGTCGCGCAGGACCGTCAGCCGAACTTTGGCCGGTGTCTGCCGGAGAGCAGCTATTGCATCTTCATGAGCCACGCTGCGCAGATCTACTCCATTCACCTGCAGGGGGCGCCAGAGAACAGCGTCTCCTTAAACAGCTACCCCAAGTTTAAGctattaaaaaattactttcaatTAATATAACAGAAACGATAGATCGACACAGAATTACAAAACGTAAAATGAACTAgcattacaaattacaaattaaaaagaaaacaaaagcattaaaataaaagctatattCACAGCGCATATGGAGAGAACGAGCTCAAGCTACTCCCCGTCCAGAAGATGGCACTATTGTCAAAGTTAAACACAGAGAAGCGCCGCTCAGATCTGTAGTAACTCACAAGAGTACAGAGCCTCCAACCAAAGCCAGATTTCCATTTAGCTGAAGGCAGACCAGCTGTCAGTGACATTAcaacacgctctctctctcacaaacaaaCCTCCAGAATCTGATCCCCGGCCCAGAGACGGCCGTCCCGCGCCGCCGCCCCCTCCTCGTACACTTCATGAATCACTATGGCATCCTgagaagaggagaaaagagaggaaccaaaaagagaaacaaattcatattaaatcCAACACAATACACTCAAACACAAAGTCTTCTGAAATCATAGATCACagatttgtgtgaaaaaaa
>TU223392
GCTGCTTGAACTTCACATCATGAACTTGTTGTAAACTGGGCTTTGGGTTTTAGGAGCTAGGTGGAGCTCACCTTGAGAATGGCGGCAACGGTCTCCTGTGAGGCCTGTCTCATGTCCTCTCCATCCACAGACAGGATCTGATCCCCCTGCATCAGTCTGCCGTCCAGATCAGCTGCTCCACCCTTCACCACATCCGAGATAAATACACCCTTACCGTTCCTGAAGAGACAGGGAAGCAGAAAGTTAGGCTTTAGGCCCAGTCCGCGTCCGGTTCTCTTCTGAAGCTCAACACGAAACACGTCAAGGTTCTCCTCGTCCCTGTATTGTGCCTCGTCGCGCAGGACCGTCAGCCGAACTTTGGCCGGTGTCTGCCGGAGAGCAGCTATTGCATCTTCATGAGCCACGCTGCGCAGATCTACTCCATTCACCTGCAGGGGGCGCCAGAGAACAGCGTCTCCTTAAACAGCTACCCCAAGTTTAAGctattaaaaaattactttcaatTAATATAACAGAAACGATAGATCGACACAGAATTACAAAACGTAAAATGAACTAgcattacaaattacaaattaaa

Function

symbol description
patj Predicted to be involved in microtubule organizing center organization; regulation of microtubule cytoskeleton organization; and tight junction assembly. Predicted to be active in several cellular components, including apical part of cell; bicellular tight junction; and plasma membrane. Orthologous to human PATJ (PATJ crumbs cell polarity complex component).
inadl InaD-like protein

NR:

description
PREDICTED: inaD-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223387 False 1749 lncRNA 0.42 2 8903074 8905743
TU223389 True 1940 lncRNA 0.40 2 8903074 8905934
TU223390 False 1023 lncRNA 0.47 2 8903800 8905743
TU223392 False 580 lncRNA 0.49 2 8903800 8905300

Neighbor

gene id symbol gene type direction distance location
tal1 tal1,LOC107669848 coding upstream 16646 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 43005 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 56018 8828910 ~ 8847056 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding upstream 83480 8813432 ~ 8819594 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding upstream 90208 8807166 ~ 8812866 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding downstream 90037 8995971 ~ 9004905 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 292090 9198024 ~ 9223536 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding downstream 317876 9223810 ~ 9227301 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 322474 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 330165 9236099 ~ 9248034 (+)
G150939 NA non-coding upstream 2102 8899576 ~ 8900972 (+)
G150938 NA non-coding upstream 3608 8899046 ~ 8899466 (+)
G150937 NA non-coding upstream 4640 8898220 ~ 8898434 (+)
G150936 NA non-coding upstream 8317 8892564 ~ 8894757 (+)
G150928 stx6,LOC107715114,LOC107669815,LOC107653648,LOC107731540 non-coding upstream 47823 8854822 ~ 8855251 (+)
G150942 NA non-coding downstream 1463 8907397 ~ 8908479 (+)
G150943 NA non-coding downstream 3996 8909930 ~ 8910130 (+)
G150944 NA non-coding downstream 12129 8918063 ~ 8918665 (+)
G150948 NA non-coding downstream 25545 8931479 ~ 8932019 (+)
G150949 NA non-coding downstream 26623 8932557 ~ 8932788 (+)
G150940 NA other upstream 763 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 10875 8890622 ~ 8892199 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 285469 8614289 ~ 8617605 (+)
G150756 NA other upstream 734802 8167449 ~ 8168272 (+)
G150369 NA other upstream 2194183 6708488 ~ 6708891 (+)
G150945 NA other downstream 13345 8919279 ~ 8919780 (+)
G150946 NA other downstream 15764 8921698 ~ 8921967 (+)
G150965 NA other downstream 82252 8988186 ~ 8988691 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 548904 9454838 ~ 9530165 (+)
G151232 NA other downstream 671745 9577679 ~ 9580151 (+)

Expression


Co-expression Network