G150959 (patj,inadl,LOC107669802,LOC107731530,LOC107715056)


Basic Information

Item Value
gene id G150959
gene name patj,inadl,LOC107669802,LOC107731530,LOC107715056
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8966543 ~ 8973285 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU223411
TGCATAGGTGGTAGAGTGACATCCAACTTTGCTGCTGGTTGCTCATCGGCACCCTCTACAGGCCAAGAGGACTGCTGCCCAATACCTCTGTCCTCTGGCTGTGCAGATCACAGACCACCAGCGGTTTCCTGATTCCAAGGTAGACTCTCCCAAGGGGGGCAGATTTGAGAACCTCTACGGCCTGGGCCAGAGAGCATGTGTCTAGTTGAGTGTCATTGACGAAAACCAGCTGGTCACCTGGGAGGAGCCCGCCGTGATTGTCCGCCACCCCTCCAGGCACCACAGACCGGATGACGATCACTGAACGCGCAACATCCAGAGGGTCCTGTAGTCTAGTATGCTGAAGCCAAGACCTCGTTCTCCTTTCTCTAGTTCTACCACCTGCACATTTGGTGACCAGAGAGCCAATTCcccttcatcctcctcctcttcttcatcttcatcatccttctcctcctccatctgctCTTTCTTAGGGCTGCTTGACTCTAGGGCCTCTTCTTCATCGTTAGCCTCCTGCTCCACTGCTGTTGCCTGACGGG

Function

symbol description
patj Predicted to be involved in microtubule organizing center organization; regulation of microtubule cytoskeleton organization; and tight junction assembly. Predicted to be active in several cellular components, including apical part of cell; bicellular tight junction; and plasma membrane. Orthologous to human PATJ (PATJ crumbs cell polarity complex component).
inadl InaD-like protein

NR:

description
PREDICTED: inaD-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223411 True 542 lncRNA 0.55 3 8966543 8973285

Neighbor

gene id symbol gene type direction distance location
tal1 tal1,LOC107669848 coding upstream 80115 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 106474 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 119487 8828910 ~ 8847056 (+)
LOC122327627 LOC107653644,LOC107715111,LOC107588053,LOC100711005,LOC102215641,LOC101481666 coding upstream 146949 8813432 ~ 8819594 (+)
ankrd29 ankrd29,LOC107669827,LOC107653646,LOC107731532,LOC107715109 coding upstream 153677 8807166 ~ 8812866 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding downstream 22686 8995971 ~ 9004905 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding downstream 224739 9198024 ~ 9223536 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding downstream 250525 9223810 ~ 9227301 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 255123 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 262814 9236099 ~ 9248034 (+)
G150953 NA non-coding upstream 18833 8947116 ~ 8947710 (+)
G150952 NA non-coding upstream 20349 8944436 ~ 8946194 (+)
G150951 NA non-coding upstream 27767 8938403 ~ 8938776 (+)
G150949 NA non-coding upstream 33755 8932557 ~ 8932788 (+)
G150948 NA non-coding upstream 34524 8931479 ~ 8932019 (+)
G150962 NA non-coding downstream 361 8973646 ~ 8973906 (+)
G150963 NA non-coding downstream 8202 8981487 ~ 8981765 (+)
G150964 NA non-coding downstream 8831 8982116 ~ 8982356 (+)
G150967 NA non-coding downstream 21921 8995206 ~ 8995483 (+)
G150969 NA non-coding downstream 40249 9013534 ~ 9013852 (+)
G150946 NA other upstream 44576 8921698 ~ 8921967 (+)
G150945 NA other upstream 46763 8919279 ~ 8919780 (+)
G150940 NA other upstream 64232 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 74344 8890622 ~ 8892199 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other upstream 348938 8614289 ~ 8617605 (+)
G150965 NA other downstream 14901 8988186 ~ 8988691 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 481553 9454838 ~ 9530165 (+)
G151232 NA other downstream 604394 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 914878 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 922156 9895441 ~ 9910793 (+)

Expression


Co-expression Network