LOC122327757 (creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456)


Basic Information

Item Value
gene id LOC122327757
gene name creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10701622 ~ 10709755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU224309
TGCGTCCCAAAGAGACGGGCGGTATAAGTCTGACTTCGCCGTTAAAACGAATCCAAAAACATCGGGCAAAATGGTGAACTTCACAGTGGACCAGATCCGTGCCATCAGGGCCAGGCAGTCAAATATGTGTAATATTGCACACGTTGATCACGGCGAGTCCACTTCGACAGACTTTCTGGTGTCAGAAGCTGGTATCATTCCCTCAGTCCATGCTGGAGAAAGGAAGGCTGAGCAATCCACGAGGATGTGTCTAGACGGAGGCTGTGCTCAGACAGGCCACTGGTGAGAGAATAAAGCCAGTATTAATTAACAAGATGGCTCACGCATTGATGGAGCTGCAGCTGAGCCCAGAAGAGCTGTACCAGATTTTTGCTGCGCATTGAGAATGAATCTATGGGCAACATTATGGCGTTGGTACTGTTGGCTTTGGACTGCATGGTTGAGCTCTGAAGTGGAGATGTATGTGGTGACGCTCAGCTGAGCAGTGCAAGTTGAAGATGTGATGAAGCTTCGGGGGAGACTGGTACTTTGACCCTCTTTGTGGCAAGTTTAGCCAGTGTCCCACTTCACCAGATGGTGAATAACTTACTAGGACTTCTGCCCAACTGATCCTAGACCTTATCTTTTAAAGTATTTGAACTTTGAACGTTTGAGGAAGAAACTAAGCTGACTGAGACGCTGGACATCAAATTAGATTCTGAGGACAGGGGGCCCTGCTTGAAGTCTGTGTCGTTGCCAGAAGGAGAAGCTCTGCTTCAGATGATCACCATCCACCTGCCCTCAGTTTACTATTCAGAAGTACTGCTGTGAGCTGCTTTTTAAAGGACCTGGAGATGATGCTGCCATGGGTATGTTGTAGCTATCggaacatttgatttaaaagtgGTATATGTCCTGGGGTGTTTAACATACTTGGTACCACTATTTAGACCGGTCACACCTTTGCCATTTTAAAGGAcggtcttttgtttttgtttttccccttttaGGCAGTTTTTCTAGCCTTTATTGTATgtcatgttttgtcatttgctcgtgtattaataaagcaataattgTTAGAAAACTTGCTATTGTGAtttttgaaattaatgttttgttaaaactgagttaactataataattttcacaatttaTGTATATTCTGTGCTTGCTGTAATAAATGTGATCAATCTACctccaaa
>TU224310
TGAAATTAAAAGGGAAGTTGGTGTCGAGGCTGTGGATATGCGCCTGGGATGTGACGATGCGAGGCTCCGGAAGAGGGCTTGCGGTTGGCGGCGGACTGTCGATGTGATCCGAATGAGGATCTTCGCTGATCCCGCTGTCGCTGGGAGAGGGCGACCAAACTGGAGATCCAGAAACAGAGTCATAGCCACCTAAAAGTGCGTTGAAGAACTCTTCGTTACCCTGAGCGGGCATCATGTGAGGATCTTGAACTGGCCAAGGCTGATCGCTTTGTGGTCCCATAGTCTCATGCCGTAAGATGCCGTCATTCTTATCAAAGAGCAAATCGAGTAGTTCTATCCCTTCACCACCCTGAGGATATATTTGCCTTATATATCATTTGTTGCCACCAAAACAGTTGAAAGCAAGCAAATGTTGAAAAAACTGTTCCATTTTTTGAACTTTGCTCCGTATGA
>XR_006247710.1
ATACAGTGAGATACGTGACAGACAGCGTTGGACACCCTGTTCTCCACATTCTCTGTCATCCTGGAAACTACGATAGTgatactgcacctttaaacgCGAGGCATGGCCCGACGTCATCACGTACAGTACGTACAGCGCGCGCTTGATATATATTCATGAGGGTCGCTTTCCTCCCTCCCTTTTCCGCCTGCGTCCCAAAGAGACGGGCGGTATAAGTCTGACTTCGCCGTTAAAACGAATCCAAAAACATCGGGCAAAATGGTGAACTTCACAGTGGACCAGATCCGTGCCATCAGGGCCAGGCAGTCAAATATGTGTAATATTGCACACGTTGATCACGGCGAGTCCACTTCGACAGACTTTCTGGTGTCAGAAGCTGGTATCATTCCCTCAGTCCATGCTGGAGAAAGGAAGGCTGAGCAATCCACGAGGATGTGTCTAGACGGAGGCTGTGCTCAGACAGGCCACTGGTGAGAGAATAAAGCCAGTATTAATTAACAAGATGGCTCACGCATTGATGGAGCTGCAGCTGAGCCCAGAAGAGCTGTACCAGATTTTTGCTGCGCATTGAGAATGAATCTATGGGCAACATTATGGCGTTGGTACTGTTGGCTTTGGACTGCATGGTTGAGCTCTGAAGTGGAGATGTATGTGGTGACGCTCAGCTGAGCAGTGCAAGTTGAAGATGTGATGAAGCTTCGGGGGAGACTGGTACTTTGACCCTCTTTGTGGCAAGTTTAGCCAGTGTCCCACTTCACCAGATGGTGAATAACTTACTAGGACTTCTGCCCAACTGATCCTAGACCTTATCTTTTAAAGTATTTGAACTTTGAACGTTTGAGGAAGAAACTAAGCTGACTGAGACGCTGGACATCAAATTAGATTCTGAGGACAGGGGGCCCTGCTTGAAGTCTGTGTCGTTGCCAGAAGGAGAAGCTCTGCTTCAGATGATCACCATCCACCTGCCCTCAGTTTACTATTCAGAAGTACTGCTGTGAGCTGCTTTTTAAAGGACCTGGAGATGATGCTGCCATGGGTATGTTGTAGCTATCggaacatttgatttaaaagtgGTATATGTCCTGGGGTGTTTAACATACTTGGTACCACTATTTAGACCGGTCACACCTTTGCCATTTTAAAGGAcggtcttttgtttttgtttttccccttttaGGCAGTTTTTCTAGCCTTTATTGTATgtcatgttttgtcatttgctcgtgtattaataaagcaataattgTTAGAAAACTTGCTATTGTGAtttttgaaattaatgttttgttaaaactgagttaactataataattttcacaatttaTGTATATTCTGTGCTTGCTGTAATAAATGTGATCAATCTAC

Function

symbol description
creb3l3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in digestive system; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human CREB3L3 (cAMP responsive element binding protein 3 like 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224309 False 1184 lncRNA 0.43 6 10707399 10709755
TU224310 False 453 lncRNA 0.48 2 10701622 10702328
XR_006247710.1 True 1365 lncRNA 0.44 7 10701873 10709748

Neighbor

gene id symbol gene type direction distance location
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding upstream 238425 10457205 ~ 10463197 (+)
hsd11b1la hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913 coding upstream 275315 10422888 ~ 10426307 (+)
LOC122328195 LOC107726533,LOC107596895 coding upstream 283406 10413349 ~ 10418216 (+)
LOC122328194 NA coding upstream 289168 10410257 ~ 10412454 (+)
LOC122327820 LOC107675898,LOC107726531 coding upstream 293139 10407145 ~ 10408483 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding downstream 6485 10716240 ~ 10720317 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding downstream 11345 10721100 ~ 10759871 (+)
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding downstream 146060 10855815 ~ 10857119 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding downstream 213993 10923748 ~ 10930951 (+)
crlf1b crlf1b,LOC107729674,LOC107676985,LOC107719637 coding downstream 466753 11176508 ~ 11185087 (+)
G151592 NA non-coding upstream 32410 10666056 ~ 10669212 (+)
G151516 NA non-coding upstream 280586 10388550 ~ 10421036 (+)
G151487 NA non-coding upstream 352736 10347829 ~ 10348886 (+)
G151382 NA non-coding upstream 512450 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 514039 10185635 ~ 10187583 (+)
G151603 NA non-coding downstream 758 10710513 ~ 10711972 (+)
G151624 mbd3,LOC108427158 non-coding downstream 67972 10777727 ~ 10840314 (+)
G151642 NA non-coding downstream 121103 10830858 ~ 10831344 (+)
G151703 NA non-coding downstream 222908 10932663 ~ 10932995 (+)
G151738 NA non-coding downstream 366141 11075896 ~ 11077069 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 708181 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 737988 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 790829 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 808115 9888163 ~ 9893507 (+)
G151232 NA other upstream 1121471 9577679 ~ 9580151 (+)
G151620 NA other downstream 96297 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 164673 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 208334 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 225280 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 608352 11318107 ~ 11328230 (+)

Expression


Co-expression Network