G14112


Basic Information

Item Value
gene id G14112
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1867635 ~ 1871566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU15791
AGTCGGGCCTTTTTCAACCATGAAGCTCAGAAGGCCGGTTAAGATGGTGGATACGGACCACGCAGGGTTCCACGTGTCAGGGTGAAAATCTGTGATGGAAAGACACAACCTTGTATTACATTTAAACCTGCCGTTGGGTGTGATCATGTATATGCTCGGTGGTTTGAAGGGAAATTCCCGTGGGAAAATCAGTTTGCCATGATAGTAACCACCTTCATATGGAGTTTTCTCAGGGCCACGTACTAGATAATGCCATTCCAAGATGTTGGAGGGCAGAGGTTCAGCACAGATATACGGGACTGGATCTTTCTTGATGCGCAGGTAGTCCTGTTTTAACCGCTGTGTTGCTGTGGTTGGGGCCCTCTTGTTTAAGTTGTTGCTCATCTCTTTCAACGCCCTCCACGGGATCGACCAGGGTCAAATTGGGGTGATATATTGCTATCCCTTTATTTCAGAGTAAATTCGCCCTTGATAAACTTTCAAAAATAACAAAAATGTAGCTCTTCGGCTAAGGTGAAATTGTCATCTATCCCCCATGCCAATATGGCTACTGCAACTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU15791 True 560 lncRNA 0.41 5 1867635 1871566

Neighbor

gene id symbol gene type direction distance location
CI01000001_01772744_01773670 NA coding downstream 93965 1772331 ~ 1773670 (-)
CI01000001_01760676_01761671 CPTP coding downstream 105964 1760166 ~ 1761671 (-)
CI01000001_01757774_01758445 NA coding downstream 108192 1757189 ~ 1759443 (-)
CI01000001_01707363_01743870 VWA5B1 coding downstream 123765 1707089 ~ 1743870 (-)
CI01000001_01637015_01638058 FAM43B coding downstream 229577 1636695 ~ 1638058 (-)
CI01000001_01873684_01874535 NA coding upstream 2074 1873640 ~ 1874535 (-)
CI01000001_01902970_01917410 MARCH9 coding upstream 30863 1902429 ~ 1917454 (-)
CI01000001_01932927_01933914 TSPAN31 coding upstream 61055 1932621 ~ 1933914 (-)
CI01000001_01976950_01992032 GPR182, PIP4K2CA, PIP4K2C coding upstream 105150 1976716 ~ 1993561 (-)
CI01000001_01999489_02002753 IGFBP6B, IGFBP6 coding upstream 126562 1998128 ~ 2002928 (-)
G14104 NA non-coding downstream 96167 1763669 ~ 1771468 (-)
G14100 NA non-coding downstream 112644 1754447 ~ 1754991 (-)
G14096 NA non-coding downstream 114404 1749106 ~ 1753231 (-)
G13679 NA non-coding downstream 190742 1676539 ~ 1676893 (-)
G13678 NA non-coding downstream 191557 1675806 ~ 1676078 (-)
G14257 NA non-coding upstream 22140 1893706 ~ 1896090 (-)
G14259 NA non-coding upstream 49029 1920595 ~ 1920846 (-)
G14261 NA non-coding upstream 50333 1921899 ~ 1922240 (-)
G14267 NA non-coding upstream 103629 1975195 ~ 1975867 (-)
G14217 NA non-coding upstream 132595 2004161 ~ 2005063 (-)
CI01000001_00362143_00378213 NA other downstream 1470502 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 1610118 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 1732710 122814 ~ 131380 (-)
G14219 NA other upstream 122644 1994210 ~ 1994898 (-)
G14228 NA other upstream 184408 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 387823 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 2520748 4392314 ~ 4399804 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other upstream 2604718 4468209 ~ 4523431 (-)

Expression


Co-expression Network