cks2 (cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418)


Basic Information

Item Value
gene id cks2
gene name cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11229974 ~ 11231249 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU224584
GCCTTCAGGAAAACACCGAGGAGACCCTGCGTGACTTATTTGGGCTTTCGTTTCGGATTCGGACCGGAATTAACATTTAACCGCAATGTCTTCCGCGAAAAAGCAGATTTACTATTCCGACAAGTATTCAGACGAGGAATACGAGTACAGACATGTTATGCTTCCCAAGCAGCTTTCCAAACTGGTGCCGTCCTCCCATTTGATGTCAGAGGAGGAATGGAGAGGACTGGGAGTCCAGCAAAGTCAGGGCTGGATCCATTACATGATCCATAAACCAGAGCCTCACATACTGCTTTTCCGAAGACCGCTTCCCAAGGAATGAGATCTCAAGATTGTCATCGGAAGTTAAACTACTTGGCCGACCCTGGCCATGCGTACATTTCTTTCCATACGTTGCGATTTGTATataagttttattatttgcagATCTGTGGCAATGAAATGTTACTCCTTCCCATCCCCCTTTCATTCGGAGATCCGATGGCAGCAGGAGCCCAGAGGGGACCGGGCTTGCCTCCTACAAAGCGTTTCCTTTAGATCTACACTCAAGTCACGCAAAATAAGTTGCACGGTGTTTCAGATCTAGCAAAAATCGCCCTTGTCGTGAATAGAAGGAATAGTTTTTGTTGTACACTAcgatgatttttttgttgttgcccGAACTGCTTTTGTTAACATCTCCAACTTGTACGTTGAGCAGTCAATGCTTGTTTGTTACTCATTTGTTGTtgacaaatcaataaatattatttttattagccgA
>XM_043223342.1
tgtacacGGGTCGTTTTGCAATCCTCGCCAGTCTGAAGAGACGCTGTCAAACGCAGGCGCTCGTTGAGGGGGCGGGGCTTAGACCACGAGAGGCTCAGCCTATCAGAAGCGCGGGAGGGACCGTTTGAGTTCAAAACTGAAGCGGCGCCTTCAGGAAAACACCGAGGAGACCCTGCGTGACTTATTTGGGCTTTCGTTTCGGATTCGGACCGGAATTAACATTTAACCGCAATGTCTTCCGCGAAAAAGCAGATTTACTATTCCGACAAGTATTCAGACGAGGAATACGAGTACAGACATGTTATGCTTCCCAAGCAGCTTTCCAAACTGGTGCCGTCCTCCCATTTGATGTCAGAGGAGGAATGGAGAGGACTGGGAGTCCAGCAAAGTCAGGGCTGGATCCATTACATGATCCATAAACCAGAGCCTCACATACTGCTTTTCCGAAGACCGCTTCCCAAGGAATGAGATCTCAAGATTGTCATCGGAAGTTAAACTACTTGGCCGACCCTGGCCATGCGTACATTTCTTTCCATACGTTGCGATTTGTATataagttttattatttgcagATCTGTGGCAATGAAATGTTACTCCTTCCCATCCCCCTTTCATTCGGAGATCCGATGGCAGCAGGAGCCCAGAGGGGACCGGGCTTGCCTCCTACAAAGCGTTTCCTTTAGATCTACACTCAAGTCACGCAAAATAAGTTGCACGGTGTTTCAGATCTAGCAAAAATCGCCCTTGTCGTGAATAGAAGGAATAGTTTTTGTTGTACACTAcgatgatttttttgttgttgcccGAACTGCTTTTGTTAACATCTCCAACTTGTACGTTGAGCAGTCAATGCTTGTTTGTTACTCATTTGTTGTtgacaaatcaataaatattatttttattagccgATTTGCATCCTAA

Function

symbol description
cks2 Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS2 (CDC28 protein kinase regulatory subunit 2).

NR:

description
PREDICTED: cyclin-dependent kinases regulatory subunit 1-like

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
K02219 CKS1; cyclin-dependent kinase regulatory subunit CKS1

RNA

RNA id representative length rna type GC content exon number start site end site
TU224584 False 763 lncRNA 0.44 3 11229986 11231103
XM_043223342.1 True 921 mRNA 0.46 3 11229974 11231249

Neighbor

gene id symbol gene type direction distance location
tmem59l tmem59l,LOC107719570,LOC107676980,LOC107729706,LOC107699406,LOC108439280 coding downstream 53979 11162617 ~ 11175995 (-)
ssbp4 ssbp4,LOC107719571,LOC107676978,LOC107729707 coding downstream 101304 11077596 ~ 11128670 (-)
fkbp8 fkbp8,LOC107676977,LOC107719572,LOC107699404,LOC107729668,LOC107586436 coding downstream 154321 11062765 ~ 11075653 (-)
ell ell,LOC107729685,LOC107719573,LOC107655162,LOC107586435 coding downstream 168903 11031722 ~ 11061071 (-)
dot1l dot1l,LOC107719574,LOC107655195,LOC107586394,LOC107729667 coding downstream 201861 11003059 ~ 11028113 (-)
ankrd24 ankrd24,LOC107729675,LOC107719567 coding upstream 18739 11249988 ~ 11266155 (-)
s1pr3a s1pr3a,LOC107676952,LOC107719654,LOC107729679,LOC107593356,LOC107699398,LOC107586462 coding upstream 70316 11301565 ~ 11305187 (-)
trnaq-uug_21 NA coding upstream 117131 11348380 ~ 11348451 (-)
tle2b si:dkey-42p8.3,LOC107719559,LOC107676970,LOC107699414,LOC108271164,LOC108430094 coding upstream 150944 11382193 ~ 11426081 (-)
tle5 aes,LOC107586404,LOC107593322,LOC107699415,LOC108430095,LOC108271216 coding upstream 208967 11440216 ~ 11465075 (-)
G151773 NA non-coding downstream 44055 11184230 ~ 11185919 (-)
G151775 NA non-coding downstream 49584 11179922 ~ 11180390 (-)
G151774 crlf1b,LOC107676985,LOC107729674,LOC107719637,LOC107577518 non-coding downstream 50542 11176563 ~ 11179432 (-)
LOC122327759 NA non-coding downstream 70245 11155787 ~ 11159729 (-)
G151762 NA non-coding downstream 183747 11043997 ~ 11046227 (-)
G151858 NA non-coding upstream 65976 11297225 ~ 11297463 (-)
G151870 NA non-coding upstream 140880 11372129 ~ 11378059 (-)
LOC122327760 NA non-coding upstream 259424 11490673 ~ 11492960 (-)
G151889 NA non-coding upstream 278151 11509400 ~ 11518141 (-)
G151893 NA non-coding upstream 290781 11522030 ~ 11523422 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other downstream 41282 11174143 ~ 11188692 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other downstream 235022 10935052 ~ 10994952 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other downstream 807620 10419127 ~ 10422354 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other downstream 908311 10282022 ~ 10321663 (-)
G151425 NA other downstream 1246827 9957811 ~ 9983147 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other upstream 234603 11465852 ~ 11490654 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other upstream 562324 11793573 ~ 11804698 (-)
LOC122327182 NA other upstream 610339 11841588 ~ 11845142 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other upstream 814220 12045469 ~ 12049538 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 911593 12142842 ~ 12145575 (-)

Expression


Co-expression Network