Gene
RNA
| Item | Value |
|---|---|
| gene id | G14259 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 1920595 ~ 1920846 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU15957 | True | 252 | lncRNA | 0.48 | 1 | 1920595 | 1920846 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_01902970_01917410 | MARCH9 | coding | downstream | 3141 | 1902429 ~ 1917454 (-) |
| CI01000001_01873684_01874535 | NA | coding | downstream | 46060 | 1873640 ~ 1874535 (-) |
| CI01000001_01772744_01773670 | NA | coding | downstream | 146925 | 1772331 ~ 1773670 (-) |
| CI01000001_01760676_01761671 | CPTP | coding | downstream | 158924 | 1760166 ~ 1761671 (-) |
| CI01000001_01757774_01758445 | NA | coding | downstream | 161152 | 1757189 ~ 1759443 (-) |
| CI01000001_01932927_01933914 | TSPAN31 | coding | upstream | 11775 | 1932621 ~ 1933914 (-) |
| CI01000001_01976950_01992032 | GPR182, PIP4K2CA, PIP4K2C | coding | upstream | 55870 | 1976716 ~ 1993561 (-) |
| CI01000001_01999489_02002753 | IGFBP6B, IGFBP6 | coding | upstream | 77282 | 1998128 ~ 2002928 (-) |
| CI01000001_02057429_02071506 | LIMA1A | coding | upstream | 135968 | 2056814 ~ 2071506 (-) |
| CI01000001_02126257_02127537 | NA | coding | upstream | 204219 | 2125065 ~ 2127567 (-) |
| G14257 | NA | non-coding | downstream | 24505 | 1893706 ~ 1896090 (-) |
| G14112 | NA | non-coding | downstream | 49029 | 1867635 ~ 1871566 (-) |
| G14104 | NA | non-coding | downstream | 149127 | 1763669 ~ 1771468 (-) |
| G14100 | NA | non-coding | downstream | 165604 | 1754447 ~ 1754991 (-) |
| G14096 | NA | non-coding | downstream | 167364 | 1749106 ~ 1753231 (-) |
| G14261 | NA | non-coding | upstream | 1053 | 1921899 ~ 1922240 (-) |
| G14267 | NA | non-coding | upstream | 54349 | 1975195 ~ 1975867 (-) |
| G14217 | NA | non-coding | upstream | 83315 | 2004161 ~ 2005063 (-) |
| G14213 | NA | non-coding | upstream | 84449 | 2005295 ~ 2007049 (-) |
| G14216 | NA | non-coding | upstream | 181310 | 2102156 ~ 2102501 (-) |
| CI01000001_00362143_00378213 | NA | other | downstream | 1523462 | 361614 ~ 378213 (-) |
| CI01000001_00238241_00249437 | NA | other | downstream | 1663078 | 238241 ~ 249437 (-) |
| CI01000001_00124107_00131285 | ELOVL4B | other | downstream | 1785670 | 122814 ~ 131380 (-) |
| G14219 | NA | other | upstream | 73364 | 1994210 ~ 1994898 (-) |
| G14228 | NA | other | upstream | 135128 | 2055974 ~ 2056478 (-) |
| CI01000001_02258523_02262621 | NA | other | upstream | 338543 | 2258442 ~ 2263103 (-) |
| CI01000001_04395469_04399381 | FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | upstream | 2471468 | 4392314 ~ 4399804 (-) |
| CI01000001_04468566_04523431 | DNMT3BB.1 | other | upstream | 2555438 | 4468209 ~ 4523431 (-) |
