LOC122327264


Basic Information

Item Value
gene id LOC122327264
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12076741 ~ 12080117 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU225356
GCTCATCGGCCCAAAAAGGGTAAACGACGAGAAATAAAGCAAAGCCTATAGAGCCGCTCTCACGCAGTCGACGCACCTCTTCACTCTCACCGAGGAGAACGCTTGAGAGCCGTCCGGGGGCCGTGTTTCGACGCGAGGCGAGCGCTCGGGACGCCTCTCTCAGGTGTTGCGCGAAGCCCGGACCCTCTGAGCTGCAGTGCGCATTGCTAGGAATCGTGGCTGAGATGAGCAGCAGGATTTCAGTCATTGTTTCTAGTAGTGGGCGCTGCAGATATTCGGCTCCTCGAGCACAGTGAAAGCCGCTGGATGGCGGCAGAGCGCGAGGAGAGCGGCGCAGGAGAACACGTGAGGATCCGCGTCGTTCACACCCGCAAGTAACCGTGAAAATCTCCGGCATGCAGGTGAACCTGCCcgggagaggaggaggaggaggaggaggaggaggctggCGTTCACACTTCCTCATTCACTTGTAATTGAGGCCCTTGTGCAGAAAATAACCACAGCGGAATTTGCGTTTCATCATATGCGGCCAGTGGAGTTGTCGAGGGTCAGTGACAAAGACGATGAAAACGAAACGAAAGCTCATTGCGGCCGCATGCGTTTGAACTGTTTTTCCACAATGGTTTCGATTTAACGACAAACATGGCAGTTTGCCGTTTTAAAACCACtttcgattaaaaaaaaatgcttacacTTGAGCAAGGAGGCCCGTCAGGGTTGCctctgatgtcatttcctggTCTGTCACGTGACAATAAAACGAAAGCGTGAGGGGGGGGAAAAACTAAACGCTTCCTTGTTACTGATAAGCGTTTATAGGCCTCGGAAGAACCGAAGTCTGTAAATGATCGTCGTTTACTCGCTGCTTTTATGAACAAAtaattgcatattaataaaacaatgaatgtCCCAA
>XR_006247624.1
gtgtgtgtgtgtgtgtgtgcgcgtatttttttatttttcaacagaaTAAGTTTTTACACGCATATCCAAcctgtttgagtttaattagCACTGACTCGACACACCCTCATGTGACCACCTGTACCGGTTTTTCCTGAAGATGCGCCGCAGGCTCATCGGCCCAAAAAGGGTAAACGACGAGAAATAAAGCAAAGCCTATAGAGCCGCTCTCACGCAGTCGACGCACCTCTTCACTCTCACCGAGGAGAACGCTTGAGAGCCGTCCGGGGGCCGTGTTTCGACGCGAGGCGAGCGCTCGGGACGCCTCTCTCAGGTGTTGCGCGAAGCCCGGACCCTCTGAGCTGCAGTGCGCATTGCTAGGAATCGTGGCTGAGATGAGCAGCAGGATTTCAGTCATTGTTTCTAGTAGTGGGCGCTGCAGATATTCGGCTCCTCGAGCACAGTGAAAGCCGCTGGATGGCGGCAGAGCGCGAGGAGAGCGGCGCAGGAGAACACGTGAGGATCCGCGTCGTTCACACCCGCAAGTAACCGTGAAAATCTCCGGCATGCAGGTGAACCTGCCcgggagaggaggaggaggaggaggaggaggaggctggCGTTCACACTTCCTCATTCACTTGTAATTGAGGCCCTTGTGCAGAAAATAACCACAGCGGAATTTGCGTTTCATCATATGCGGCCAGTGGAGTTGTCGAGGGTCAGTGACAAAGACGATGAAAACGAAACGAAAGCTCATTGCGGCCGCATGCGTTTGAACTGTTTTTCCACAATGGTTTCGATTTAACGACAAACATGGCAGTTTGCCGTTTTAAAACCACtttcgattaaaaaaaaatgcttacacTTGAGCAAGGAGGCCCGTCAGGGTTGCctctgatgtcatttcctggTCTGTCACGTGACAATAAAACGAAAGCGTGAGGGGGGGGAAAAACTAAACGCTTCCTTGTTACTGATAAGCGTTTATAGGCCTCGGAAGAACCGAAGTCTGTAAATGATCGTCGTTTACTCGCTGCTTTTATGAACAAAtaattgcatattaataaaacaatgaatgtCCCAAACCTGCCGGCTCCAGCCGAGTGATTCATTTAGGCAATTTGCAACAAGCTTCTTctgtattcatttgtttttcatccactcaaatgaatgttttctgtattaaacttttttttagtcGCACTGTGGTGACATTTGCTTAAAAGGCAAAGCAAAAAAGTTTACTgatctttttatatatgtaatattatttaactgtgtgtgtgtgcgcgcgcgcgtgtgacAATATCGGTCAGCAAGTTTATCTAAATGAGACACTGGCTCACAAACGCGCGTcctttaaaagtcatttatttggTATTTACAGTTGGCCAGTGGAAGCTATGAGAATGTGCAAGATACAAACACTTTCGCCGGCCGCAAAACCGTTTCCAGCAGCAGCTGATTGTGAAACAAACCGGCGTGGACCTCGTCTCTGTCGCGTATCGGGTGCTAAAAGTTCAGTtcgtttgtgtttgtttacagcAATACTTGGTTAAAATCCCTGAATGTTGAACGACATTTGGCACAAAACCCCATCCAGCCAATTAGTATCAGAATTGCGACGTACAATTATGTTTTTCGACTACTACGCGCGCCGGATCGACACCGcactgaaaaagagagagagatatatatatatgcacattcatcactaaaacacacacgtaAAGTGATTCGAAACTGTAATACGACTGCACAAGAAAAATGGTCTCAAATCACCTTTTAAGCGTAGCAGCGCGGCAACAGAAGAGATTTTCCCTACGTGTTTATTGGACGCGTTTCAGGCCACGCCTTTCACCGGAACGCACCGAATGAATCGTTCTCGAGAGCAGAAGCGGTCGGACGCCGGTCGTATAGAGGCACTAATGCGATACAAAAAGTAGCTGCTGTCTTTAGTCGTATCTGTACAGGATGCTACATGGAGCCCGCGCGATCGTATTCCCGTTCCCAAAAGGCCGAGCGGAACGCGATCCCTTTAAAAcgcatttattttgacaggaaCACGGAACGCGAGCGATGACTGAGCAgtaaggaaagaaaacaaatgccCTTGTAGAGTGATGAGCGTGCGGCACTTTCCATAAAGAGGTGCAAAATCGGTCTGTTTCAAGGGAAAgttaaacaagacaaaaaaaaagaaaaacattagataagctagttttattattttgtggaaTGTTAAAAGCATCGTAATACTGTCgaatctattttaaatactgaACAATTGGTTTCCGGTCCCCAGCTAGAGAGCTTCAACTGAATTAGAAGTTATTGTTTaggtttattgtttttttaatttttgctattttctATTTGCTTGAAATAAACAAGCTGGCAAAAGATATCACGTTacacacaaactaaaaaaacaaaacaaaagctatACAAACCAAAGcaataaaagaaatgcaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225356 False 916 lncRNA 0.51 2 12078143 12079967
XR_006247624.1 True 2468 lncRNA 0.45 2 12076741 12080117

Neighbor

gene id symbol gene type direction distance location
uts2d NA coding downstream 21345 12054271 ~ 12055396 (-)
LOC122327260 LOC107664925,LOC107741564,LOC107655340,LOC107715693,LOC107564927,LOC107560680 coding downstream 23246 12050679 ~ 12053495 (-)
si:ch211-117l17.5 LOC107655356,LOC107715708,LOC107741540,LOC107564934,LOC107664973 coding downstream 33674 12040276 ~ 12043067 (-)
rgs2 LOC107741538,LOC107564933,LOC107664962,LOC107560697,LOC107735525 coding downstream 44379 12030462 ~ 12032362 (-)
LOC122327835 NA coding downstream 206456 11862795 ~ 11870285 (-)
LOC122327878 LOC107664873,LOC107570371,LOC107664867,LOC107570369,LOC107563524,LOC107655402 coding upstream 119883 12200000 ~ 12206631 (-)
LOC122327083 LOC107664867,LOC107570369,LOC107655402,LOC107570371,LOC107664873,LOC107563524 coding upstream 143370 12223487 ~ 12230101 (-)
LOC122327080 LOC107655402,LOC107664867,LOC107570371,LOC107664873,LOC107570369,LOC107563524 coding upstream 168062 12248179 ~ 12254746 (-)
LOC122327050 LOC107570370,LOC107664859,LOC107741528,LOC107664867,LOC107570371 coding upstream 179992 12260109 ~ 12268021 (-)
vtg8 LOC107715730 coding upstream 190011 12270128 ~ 12278886 (-)
G152234 NA non-coding downstream 49946 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 79696 11993123 ~ 11997045 (-)
G152223 NA non-coding downstream 83708 11992713 ~ 11993033 (-)
G151919 NA non-coding downstream 486818 11587661 ~ 11589923 (-)
G151904 NA non-coding downstream 525871 11550198 ~ 11550870 (-)
LOC122327175 NA non-coding upstream 3390 12083507 ~ 12086914 (-)
G152300 NA non-coding upstream 210799 12290916 ~ 12291260 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 330483 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 338241 12418358 ~ 12426088 (-)
G152339 NA non-coding upstream 346639 12426756 ~ 12426972 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 27203 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 231599 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 272043 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 586087 11465852 ~ 11490654 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other downstream 845492 11229974 ~ 11231249 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 62725 12142842 ~ 12145575 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 277566 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 480726 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 826016 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 1117917 13198034 ~ 13202269 (-)

Expression


Co-expression Network