polr3f (polr3f,LOC107655353,LOC107715715)


Basic Information

Item Value
gene id polr3f
gene name polr3f,LOC107655353,LOC107715715
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12357683 ~ 12363395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU225457
aaaaactcagtgcctaaaaaaaaaaggtttggagTTAATCTGTGTCGTTGTCATGATtggcatattttaattatttaaaaaaaagtttttttgtaatttatgatatcacaaatttgcattttaagcAACGATtcgattttaattatttttttttttctgatttctgtGCCAATGCATTGTGCCAAACACTCAAGGTTTATGCAGAGTAcactgcatatttttattttatttattttttatctttctcACTGATACTatttcacatgcatttttaaaaagtgaacgTCATGGGAATTTTGCCTAAATAATTAGCGCCGTGACTAATGGCCAATTATGGCATCCCTTTCATTTTCACCACCCGCGTCAGTTTATTATGTGCTGGAGTACGTCGATACGCCGGAAGGGCGCGTGtctttaatttactttttaattttgtgtgcgTGTACGAACTGCTTTTCAAACATCAGCCAGAatatgaaagaaattaatacttttgttcagcaatggtgcattcatttaataactGAGCGACTGTAAAGACTTGCAAAACtaatcatttgtatttaaaaagtgcCGTCCAATTGAACTTATGcaaagaatcctgaagaaataaaatattaattgcataAATCAGCAGCACAGcgatttgcatgaaaaaaaaagttatcttcCACCCACAGAAactcatttttatgttatttcatcGAATAAACAAGACTTTCAAAAc
>XM_043223779.1
GCAACCCAGCAGCCAGCGAACTCTCCCAGTGTATCGCAACAGCATGATCGCAGAGTGCAATTCGATACagctttacatttatatttgaatgtgcGTTTATTAATGCTGACATTTAACTTTCGCGTCAAGGAGTTCCTTTCTAATGAACAATGACAGAAGTTAAAGTCAAAAAGGAGTCCACGGACCCTGTAGATATCGAGAATAGGATAAAAGAGCTGTGTCAGCAGTTTCCACATGGGATCACAGACCAGGTCATCCAGAATGACATGCCTCACGTTGAGGCGCAGCAACGGGCCTCGGCTATAAACAGACTACTGTCTGTGGGTCAATTGGACTTGCTTAGAAACAGCAATGGCCTTTTATATAGGCTTAAGGATGTTCAGTCTGCAAGtaaagTGAAAGGTTCTGATAATCAAGAGAAACTAGTTTACCAGATCATAGAAGATGCTGGAAATAAAgGAATTTGGAGCAGAGACATCAGATATAAGAGTAACCTTCCGCTCACGGAAATCAATAAAATCCTCAAGAATCTCGAGAGTAAGAAACTCATCAAAGCAGTGAAGTCGGTCGCGGCCTCAAAGAAGAAGGTGTACATGCTGTACAACCTGCAGCCGGACCGATCTGTGACAGGAGGAGCCTGGTACAGCGATCAGGATTTTGAGTCCGAGTTCGTCGAGGTTCTCAACCAACAGTGCTTTAAGTTCCTGCAAAGTAAGGCCGAAGCGGCGCGAGACAGTAAGCAGAGCCCCATGGTGCAAAGAAACAGCTCGTTCGCCACCTCTCATGAAGTGTGGAAGTACATCTGCGAGCTTGGCATCAGCAAAGTGGATTTGTCCATGGAGGACATCGAGACCATTCTAAACACGCTCATCTATGACGGCAAAGTGGAGATGACCATAATCGCCGCTAAAGAGGGGACGGTGGGGAGCGTAGACGGACAGATGAAGCTCTACAGGGGGGTGAACCCTATAATTCAACCCACCGGCCTGGTCAAAACACCGTGTGGGCTGTGTCCGGTGTTCGATGACTGCCATGAAGGGGGCGAGATCTCTCCGTCTAACTGCGTTTACATGGCCGAGTGGCTGGATTTCTGAAAAAGCCAAACAGGAcgtcttttgtttttctctgtggaGAAAGGGTTTTTCGTGCAGCATCcgatgtctttttttatttgcgtttCGAACACTGATGGCTTTAACGACTCGAGCAGAACTACACGAAGCGAATAAGAAGAAGCTTGGACACACaaagactgattttttttttttcgtttgttaggttttttttttttattgcttctcTTCACCCACAGATACGTCTTTAAAGATATACCTCAACCGTTTCAGTGAATAAAGGTTTTCGTAGTTGAAAGGTAGTCCGCACGTCGGacggtgtgtttgtgtgcctcCGTCGTTTTTAACGGCACTTGTGTTTTTATGAGGATATTCTATGAATCAGTAAATTCATGATTTCAGCGTAGCCGCAAACtattgaggtaaaaaaaaaaaactcagtgcctaaaaaaaaaaggtttggagTTAATCTGTGTCGTTGTCATGATtggcatattttaattatttaaaaaaaagtttttttgtaatttatgatatcacaaatttgcattttaagcAACGATtcgattttaattatttttttttttctgatttctgtGCCAATGCATTGTGCCAAACACTCAAGGTTTATGCAGAGTAcactgcatatttttattttatttattttttatctttctcACTGATACTatttcacatgcatttttaaaaagtgaacgTCATGGGAATTTTGCCTAAATAATTAGCGCCGTGACTAATGGCCAATTATGGCATCCCTTTCATTTTCACCACCCGCGTCAGTTTATTATGTGCTGGAGTACGTCGATACGCCGGAAGGGCGCGTGtctttaatttactttttaattttgtgtgcgTGTACGAACTGCTTTTCAAACATCAGCCAGAatatgaaagaaattaatacttttgttcagcaatggtgcattcatttaataactGAGCGACTGTAAAGACTTGCAAAACtaatcatttgtatttaaaaagtgcCGTCCAATTGAACTTATGcaaagaatcctgaagaaataaaatattaattgcataAATCAGCAGCACAGcgatttgcatgaaaaaaaaagttatcttcCACCCACAGAAactcatttttatgttatttcatcGAATAAACAAGACTTTCAAAAccgtttaaaaatattcaagatGCTAAACCATAACCGTATATAACCGCTGCTTCGGGGGATGTTTAAACAGCTTGTCATTCATTTAGATTAGTTTAAATGTCAGAGCAGTCATTTCCATTTCCAAAGTTGTTATGAATTTTTTAACGCATCGATTGTGAGGTTACATCAATGATGCGCAAAGCATAAATGCATCCAAATACATAAAATCAGA

Function

symbol description
polr3f Predicted to enable DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3F (RNA polymerase III subunit F).

NR:

description
DNA-directed RNA polymerase III subunit RPC6

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03025 RPC6, POLR3F; DNA-directed RNA polymerase III subunit RPC6

RNA

RNA id representative length rna type GC content exon number start site end site
TU225457 False 727 lncRNA 0.32 1 12357893 12358619
XM_043223779.1 True 2441 mRNA 0.40 9 12357683 12363395

Neighbor

gene id symbol gene type direction distance location
nptxrb nptxrb,LOC107570379,LOC107715736,LOC107655393,LOC107664882 coding downstream 190 12352906 ~ 12357493 (-)
dnal4b dnal4b,dnal4,LOC107570373,LOC107655394,LOC107715714,LOC108436609,LOC106591471 coding downstream 6869 12349018 ~ 12350814 (-)
fam20cl fam20cl,LOC107741571,LOC107664989,LOC107570372 coding downstream 11887 12340775 ~ 12345796 (-)
LOC122327889 NA coding downstream 20009 12334278 ~ 12337674 (-)
LOC122327886 NA coding downstream 25426 12326112 ~ 12332257 (-)
kat14 kat14,csrp2bp,LOC107570376,LOC107659341,LOC107563531,LOC107655392 coding upstream 10214 12373609 ~ 12380711 (-)
LOC122327834 pet117,LOC107741527,LOC107570376 coding upstream 17896 12381291 ~ 12382335 (-)
LOC122327653 c3b.1,LOC107659332,LOC107722668,LOC107755339,LOC107565182,LOC107655386,LOC107755338 coding upstream 215116 12578511 ~ 12596465 (-)
LOC122327651 c3b.2,c3b.1,LOC107659332,LOC107755338,LOC107655386,LOC107565182,LOC107569121,LOC107755339,LOC107722668 coding upstream 234748 12598143 ~ 12615528 (-)
LOC122327652 LOC107755339,LOC107655386,LOC107722668,LOC107659332,LOC107565182,LOC107755338 coding upstream 252921 12616316 ~ 12633995 (-)
G152300 NA non-coding downstream 66423 12290916 ~ 12291260 (-)
LOC122327175 NA non-coding downstream 270769 12083507 ~ 12086914 (-)
LOC122327264 NA non-coding downstream 277566 12076741 ~ 12080117 (-)
G152234 NA non-coding downstream 330888 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 360638 11993123 ~ 11997045 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 47205 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 54963 12418358 ~ 12426088 (-)
G152339 NA non-coding upstream 63361 12426756 ~ 12426972 (-)
G152340 NA non-coding upstream 71186 12434581 ~ 12434956 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding upstream 111373 12474768 ~ 12479452 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 212108 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 308145 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 512541 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 552985 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 867029 11465852 ~ 11490654 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 197448 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 542738 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 834639 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 1016294 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 1214406 13577801 ~ 13689619 (-)

Expression


Co-expression Network