LOC122328185 (pdgfa,LOC107655387,LOC107716439,LOC107659307)


Basic Information

Item Value
gene id LOC122328185
gene name pdgfa,LOC107655387,LOC107716439,LOC107659307
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12560843 ~ 12568727 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU225529
ggaaGCGCCAATTCCGCAAGAGCTAATTGAGAGACTTTCTAACAGTGAGATCCGCAGCATAAGCGACCTCCAGAGGATCCTGGAGATTGACTTCTTAGAGAATGAGGTGCTGGAGGACGTTAAACGAGGCTACCATAAGGAGCATCTGTATGATAGCAGACACCTCAAGAACTCTCACTCCAGACGCAAGAGAAGCATTGAGGAGGCAGTGCCCGCCGTCTGTAAGACGCGCACGGTGATCTACGAGATCCCACGCAGTCAGGTCGATCCCACGGCCGCTAACTTCCTGATCTGGCCTCCGTGCGTGGAGGTGAGGCGATGCTCGGGCTGCTGCAACACCAGCAACATGCGCTGCCACCCGTCCAAAAAACACCACAGGACCGTGAAGGTGGCCAAGGTGGAGTACGTACGCAGGAGGCCGAAGCTCCGGGAGGTGCAGGTGCAGCTGGAGGATCATCTCGAGTGCGTCTGCACGTCCAAACATCACTCAGAGTCCCGCATACACACGGCAGATATAAGGTGAGCGTGGCACTGGATAAAAGAAAGCAGAGGAGGGCCATCACGTCCAATCAGATAACTCAGACTGCACGACAGCCATTGAGTGATATCATCTGAAAAGACGAGGCGGATGTGAACTGTTCAACCCTGAGCGAATCAGGACTGCCTTTTTTGGATCGCTTTGGACTTTTGATGCACCTTTAGGAGAGTGAGACTCTGGTTTTGGATTAAAACCCAGGGGGAACTAAGCACAATAGAGACTTCAATGAAAGAGACTCGCGGAAAATGAACTTCTGATTCTACCTTTTAAAGGAGCATTTATCACGACTTCATTTGTGTATCAAAATTTATTTTCTGCAGCAAATATCTGTATCATCTTATTTTTGTAACTGCCAGTTTTCTATCAACACTGATCCTCTCTTGTGTATGCCGTAGAATGAACGagtacaacaaaacaaaatctgca
>XM_043223892.1
cgcacgcacacagtTTTCACGTTCACTGACGCGGTGACTTGAAAGGCTCGCGGTTAGCTGAGATTAGCTCGTCCTGAGGGGGCGCGCGCCTCGTTGAGTTTAAGATGAGGAGATGAGAGAAGCTGCGGTTCATTCACTGTCAGGTCCTTTCCACGCCGCGAGACCTGCATAGGTTCGAACCAAGCCACTTTTTATGCGAAGACAGATCGGACGGTGCATATAAAAACGGACTATTTCGGATGAACGTGGACTCTTTGCCCCACGACTTTGAGCCTTGCAGGAGAGCATTTGGATTTtaggtatttttatataaaattctgAAAGGATGAAGGATCGCTTcattcatgttttctttttccgtGAAAAGATCTCGCGCGCTGATTCGCGCGTTTGCCTTAAATTAGCGGATTAAAAAGCGACAAGAACTTATTAAAAGGATTTGCTTTCATAGAGTCGATTTTAGGGCTCGGTTTGTGAACTTGTCGGACTTGTGAAGAGTTTACCCCTTGAGAGATTTGTCTGTGGAAAGGCATGTTCCCTGGCTCCACGCCGGTTGGAGCATCTTTGCGGCTCCGGTCGGGAAGGTTTCGCCTGTGCTGGGACACATTTGGACCACAAGGGAGATGAGAGCCGCGCTGATCCACTTTCTCTTCTGCTGCTTCTCTCTGCTTTCAGCAGCCGCTGAGgaaGCGCCAATTCCGCAAGAGCTAATTGAGAGACTTTCTAACAGTGAGATCCGCAGCATAAGCGACCTCCAGAGGATCCTGGAGATTGACTTCTTAGAGAATGAGGTGCTGGAGGACGTTAAACGAGGCTACCATAAGGAGCATCTGTATGATAGCAGACACCTCAAGAACTCTCACTCCAGACGCAAGAGAAGCATTGAGGAGGCAGTGCCCGCCGTCTGTAAGACGCGCACGGTGATCTACGAGATCCCACGCAGTCAGGTCGATCCCACGGCCGCTAACTTCCTGATCTGGCCTCCGTGCGTGGAGGTGAGGCGATGCTCGGGCTGCTGCAACACCAGCAACATGCGCTGCCACCCGTCCAAAAAACACCACAGGACCGTGAAGGTGGCCAAGGTGGAGTACGTACGCAGGAGGCCGAAGCTCCGGGAGGTGCAGGTGCAGCTGGAGGATCATCTCGAGTGCGTCTGCACGTCCAAACATCACTCAGAGTCCCGCATACACACGGCAGATATAAGGTGAGCGTGGCACTGGATAAAAGAAAGCAGAGGAGGGCCATCACGTCCAATCAGATAACTCAGACTGCACGACAGCCATTGAGTGATATCATCTGAAAAGACGAGGCGGATGTGAACTGTTCAACCCTGAGCGAATCAGGACTGCCTTTTTTGGATCGCTTTGGACTTTTGATGCACCTTTAGGAGAGTGAGACTCTGGTTTTGGATTAAAACCCAGGGGGAACTAAGCACAATAGAGACTTCAATGAAAGAGACTCGCGGAAAATGAACTTCTGATTCTACCTTTTAAAGGAGCATTTATCACGACTTCATTTGTGTATCAAAATTTATTTTCTGCAGCAAATATCTGTATCATCTTATTTTTGTAACTGCCAGTTTTCTATCAACACTGATCCTCTCTTGTGTATGCCGTAGAATGAACGagtacaacaaaacaaaatctgcagtaACTGATactaataaatcaaaaacattt
>XM_043223894.1
acacacacacacacgcacgcacacagtTTTCACGTTCACTGACGCGGTGACTTGAAAGGCTCGCGGTTAGCTGAGATTAGCTCGTCCTGAGGGGGCGCGCGCCTCGTTGAGTTTAAGATGAGGAGATGAGAGAAGCTGCGGTTCATTCACTGTCAGGTCCTTTCCACGCCGCGAGACCTGCATAGGTTCGAACCAAGCCACTTTTTATGCGAAGACAGATCGGACGGTGCATATAAAAACGGACTATTTCGGATGAACGTGGACTCTTTGCCCCACGACTTTGAGCCTTGCAGGAGAGCATTTGGATTTtaggtatttttatataaaattctgAAAGGATGAAGGATCGCTTcattcatgttttctttttccgtGAAAAGATCTCGCGCGCTGATTCGCGCGTTTGCCTTAAATTAGCGGATTAAAAAGCGACAAGAACTTATTAAAAGGATTTGCTTTCATAGAGTCGATTTTAGGGCTCGGTTTGTGAACTTGTCGGACTTGTGAAGAGTTTACCCCTTGAGAGATTTGTCTGTGGAAAGGCATGTTCCCTGGCTCCACGCCGGTTGGAGCATCTTTGCGGCTCCGGTCGGGAAGGTTTCGCCTGTGCTGGGACACATTTGGACCACAAGGGAGATGAGAGCCGCGCTGATCCACTTTCTCTTCTGCTGCTTCTCTCTGCTTTCAGCAGCCGCTGAGgaaGCGCCAATTCCGCAAGAGCTAATTGAGAGACTTTCTAACAGTGAGATCCGCAGCATAAGCGACCTCCAGAGGATCCTGGAGATTGACTTCTTAGAGAATGAGGTGCTGGAGGACGTTAAACGAGGCTACCATAAGGAGCATCTGTATGATAGCAGACACCTCAAGAACTCTCACTCCAGACGCAAGAGAAGCATTGAGGAGGCAGTGCCCGCCGTCTGTAAGACGCGCACGGTGATCTACGAGATCCCACGCAGTCAGGTCGATCCCACGGCCGCTAACTTCCTGATCTGGCCTCCGTGCGTGGAGGTGAGGCGATGCTCGGGCTGCTGCAACACCAGCAACATGCGCTGCCACCCGTCCAAAAAACACCACAGGACCGTGAAGGTGGCCAAGGTGGAGTACGTACGCAGGAGGCCGAAGCTCCGGGAGGTGCAGGTGCAGCTGGAGGATCATCTCGAGTGCGTCTGCACGTCCAAACATCACTCAGAGTCCCGCATACACACGGATATAAGGTGAGCGTGGCACTGGATAAAAGAAAGCAGAGGAGGGCCATCACGTCCAATCAGATAACTCAGACTGCACGACAGCCATTGAGTGATATCATCTGAAAAGACGAGGCGGATGTGAACTGTTCAACCCTGAGCGAATCAGGACTGCCTTTTTTGGATCGCTTTGGACTTTTGATGCACCTTTAGGAGAGTGAGACTCTGGTTTTGGATTAAAACCCAGGGGGAACTAAGCACAATAGAGACTTCAATGAAAGAGACTCGCGGAAAATGAACTTCTGATTCTACCTTTTAAAGGAGCATTTATCACGACTTCATTTGTGTATCAAAATTTATTTTCTGCAGCAAATATCTGTATCATCTTATTTTTGTAACTGCCAGTTTTCTATCAACACTGATCCTCTCTTGTGTATGCCGTAGAATGAACGagtacaacaaaacaaaatctgcagtaACTGATactaataaatcaaaaacattt

Function

symbol description
pdgfa Enables several functions, including platelet-derived growth factor binding activity; protein dimerization activity; and signaling receptor binding activity. Involved in several processes, including positive regulation of intracellular signal transduction; regulation of cell migration; and regulation of phosphate metabolic process. Acts upstream of or within positive regulation of cell population proliferation. Located in cell surface and extracellular space. Implicated in high grade glioma. Biomarker of Leydig cell tumor; breast cancer; leiomyoma; and prostate adenocarcinoma.

NR:

description
PREDICTED: platelet-derived growth factor subunit A-like isoform X2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0007596 blood coagulation biological_process
GO:0043406 positive regulation of MAP kinase activity biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0048008 platelet-derived growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0031954 positive regulation of protein autophosphorylation biological_process
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005161 platelet-derived growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04359 PDGFA; platelet-derived growth factor subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
TU225529 False 964 TUCP 0.49 5 12560873 12567345
XM_043223892.1 False 1679 mRNA 0.49 6 12560843 12568714
XM_043223894.1 True 1689 mRNA 0.49 6 12560843 12568727

Neighbor

gene id symbol gene type direction distance location
LOC122327834 pet117,LOC107741527,LOC107570376 coding downstream 178508 12381291 ~ 12382335 (-)
kat14 kat14,csrp2bp,LOC107570376,LOC107659341,LOC107563531,LOC107655392 coding downstream 180132 12373609 ~ 12380711 (-)
nptxrb nptxrb,LOC107570379,LOC107715736,LOC107655393,LOC107664882 coding downstream 203350 12352906 ~ 12357493 (-)
dnal4b dnal4b,dnal4,LOC107570373,LOC107655394,LOC107715714,LOC108436609,LOC106591471 coding downstream 210029 12349018 ~ 12350814 (-)
fam20cl fam20cl,LOC107741571,LOC107664989,LOC107570372 coding downstream 215047 12340775 ~ 12345796 (-)
LOC122327653 c3b.1,LOC107659332,LOC107722668,LOC107755339,LOC107565182,LOC107655386,LOC107755338 coding upstream 9784 12578511 ~ 12596465 (-)
LOC122327651 c3b.2,c3b.1,LOC107659332,LOC107755338,LOC107655386,LOC107565182,LOC107569121,LOC107755339,LOC107722668 coding upstream 29416 12598143 ~ 12615528 (-)
LOC122327652 LOC107755339,LOC107655386,LOC107722668,LOC107659332,LOC107565182,LOC107755338 coding upstream 47589 12616316 ~ 12633995 (-)
yju2b ccdc130,LOC107655383,LOC107569130,LOC107722659,LOC107659306 coding upstream 66243 12634970 ~ 12641329 (-)
wdr83 wdr83 coding upstream 81471 12650198 ~ 12653608 (-)
G152351 NA non-coding downstream 15716 12544901 ~ 12545127 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding downstream 81391 12474768 ~ 12479452 (-)
G152340 NA non-coding downstream 125887 12434581 ~ 12434956 (-)
G152339 NA non-coding downstream 133871 12426756 ~ 12426972 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding downstream 134755 12418358 ~ 12426088 (-)
G152363 NA non-coding upstream 114363 12683090 ~ 12683385 (-)
G152386 NA non-coding upstream 179495 12748222 ~ 12748440 (-)
LOC122327774 NA non-coding upstream 375567 12944294 ~ 12953144 (-)
G152454 NA non-coding upstream 433646 13002373 ~ 13002884 (-)
G152463 NA non-coding upstream 468652 13037379 ~ 13037599 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 197448 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 415268 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 511305 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 715701 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 756145 11793573 ~ 11804698 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 337406 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 629307 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 810962 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 1009074 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 1256642 13825369 ~ 13829699 (-)

Expression


Co-expression Network