LOC122327212


Basic Information

Item Value
gene id LOC122327212
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13176427 ~ 13180275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU225740
GTTTCACTTGAGTCTGAAAAGTCACAGAAGGAACCCCTCTCTCATACTCATTTGCAGTTTCATCTGTGTAATTGCGGCGCTATTAAACAAAGTCTCTCTGCAGGTCACAGTAGAAGCTGTTATCGGTGGTTCTGTTCTTCTGACTTGTACTTCAGCTGCACGTCATAAACTTCAAGACACTGAAGTGCACTGGAGACACAACGGCAGCAGGATTGTGTTCGATATAATCAAGGGTGAAGATTCACTAGAGAAACAGCACCAGTGGTACAAGAACAGAGCTGAAACCTTCCCTGAAGAGTATATGAGAAGAAACTTCTCCATCAAGCTCAATGATCTCAGTCATGCCGATGCAGGAAAATACATCTGCTACATCAAACCCTCAGACGAACAGGAGACTGTAAAGTTGATCCTCAAGGaTAGAGAAAACGAGAAAGAAGAATATGCCGGAGCAGTTAGTGTGGGGACGCCATCACACTGTGTTTACATTGCATTATTTACAGTGCTTATAGCCTGATACAAGAACAAATATAGGTTTTCTTTGTTATTTCATGTctatgttatgtttatgataTAAAACGTCTACCAGTAAAGAGTTAACAGTGACTGTCAGACTTTGGGGTGCTAATTGGTTTAATCTAACTTACATTTGATTATCACACCCTGTTCTTGCTTATgatgttttgtatgtttagCTGTTcgtataaaaacatatacacaaaTTAATACCTAAATAGGGGCATAATAGTATACTTAACTTGTGATATAAAGTTACATCTTCAAAAAGTGCCAACTTGTATCTCAAACATATAGTTTTGTTCTGTTAGTTTTTTTGGCGTATTCCAGTTAAAGTGTCTAAACATTCCCAAAACAagtaacatatttatttcagacgcaaatattaaaatattaaaccttGTTAATATCTTAACAGCAAATCAAACTGTTCTGAagcataaacaacaaaataaaatgctgaagaaaaaaaaaaaaactaaacaaaacactgaaatgtattattcacccccggtttcacagacaaagcCTAAACCTAGTCCaagtctaaaatgtaaatctgagctgtttcttctgaaataaaatttcactGACTGATTTTAAAACTTGGCAGtgtttgcatttactttatcttaagcttttttctaaggcatgtttataagaattacttaaatgtcctaactATCCTAATAGTCACagccaaaaatattggcacccttggtaaatatgatcaaaaaaaGCTGTGAATTATTCTGCATTGTCAATCCTTTTGAACTTCTTATCatctgttaataaaaattttatatggggggaaatatcattatgaaataaaggttttt
>XM_043222428.1
ATGGTTTCTGGTGGCACTTTTCCCTACTCCAGTTTTTCCCAGAAGAACAATCCTCAGCTCGCCTTCACTCTCAGCTGTACCTTCACAGAAGGAACCCCTCTCTCATACTCATatattttttactgtttctgcAGTTGCAGTTTCATCTGTGTAATTGCGGCGCTATTAAACAAAGTCTCTCTGCAGGTCACAGTAGAAGCTGTTATCGGTGGTTCTGTTCTTCTGACTTGTACTTCAGCTGCACGTCATAAACTTCAAGACACTGAAGTGCACTGGAGACACAACGGCAGCAGGATTGTGTTCGATATAATCAAGGGTGAAGATTCACTAGAGAAACAGCACCAGTGGTACAAGAACAGAGCTGAAACCTTCCCTGAAGAGTATATGAGAAGAAACTTCTCCATCAAGCTCAATGATCTCAGTCATGCCGATGCAGGAAAATACATCTGCTACATCAAACCCTCAGACGAACAGGAGACTGTAAAGTTGATCCTCAAGGaTAGAGAAAACGAGAAAGAAGAATATGCCGGAGCAGTTAGTGTGGGGACGCCATCACACTGTGTTTACATTGCATTATTTACAGTGCTTATAGCCTGATACAAGAACAAATATAGGTTTTCTTTGTTATTTCATGTctatgttatgtttatgataTAAAACGTCTACCAGTAAAGAGTTAACAGTGACTGTCAGACTTTGGGGTGCTAATTGGTTTAATCTAACTTACATTTGATTATCACACCCTGTTCTTGCTTATgatgttttgtatgtttagCTGTTcgtataaaaacatatacacaaaTTAATACCTAAATAGGGGCATAATAGTATACTTAACTTGTGATATAAAGTTACATCTTCAAAAAGTGCCAACTTGTATCTCAAACATATAGTTTTGTTCTGTTAGTTTTTTTGGCGTATTCCAGTTAAAGTGTCTAAACATTCCCAAAACAagtaacatatttatttcagacgcaaatattaaaatattaaaccttGTTAATATCTTAACAGCAAATCAAACTGTTCTGAagcataaacaacaaaataaaatgctgaagaaaaaaaaaaaaactaaacaaaacactgaaatgtattattcacccccggtttcacagacaaagcCTAAACCTAGTCCaagtctaaaatgtaaatctgagctgtttcttctgaaataaaatttcactGACTGATTTTAAAACTTGGCAGtgtttgcatttactttatcttaagcttttttctaaggcatgtttataagaattacttaaatgtcctaactATCCTAATAGTCACagccaaaaatattggcacccttggtaaatatgatcaaaaaaaGCTGTGAATTATTCTGCATTGTCAATCCTTTTGAACTTCTTATCat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225740 False 1352 lncRNA 0.35 4 13177836 13180275
XM_043222428.1 True 1381 mRNA 0.36 5 13176427 13180221

Neighbor

gene id symbol gene type direction distance location
LOC122327210 NA coding upstream 101514 13063303 ~ 13074913 (+)
si:dkey-246e1.3 NA coding upstream 220119 12950609 ~ 12956308 (+)
tmem186 NA coding upstream 301093 12863320 ~ 12875334 (+)
slx4 LOC107755350,LOC107659319,LOC107566668 coding upstream 313750 12852441 ~ 12862677 (+)
crebbpa LOC107742089,LOC107655368,LOC107755349,LOC107566670,LOC107566050 coding upstream 324211 12813161 ~ 12852216 (+)
senp7b LOC107717676,LOC107704544,LOC107704674,LOC107566043 coding downstream 22414 13202689 ~ 13226838 (+)
abi3bpb abi3bpb,LOC107566041,LOC107717674,LOC107704546,LOC107720343,LOC108436625 coding downstream 98096 13278371 ~ 13302756 (+)
tp53bp2b LOC107717669,LOC107704550,LOC107667887,LOC107602677 coding downstream 257912 13438187 ~ 13459632 (+)
pla2g6 pla2g6,LOC107667889,LOC107704553,LOC107602675 coding downstream 300271 13480546 ~ 13497225 (+)
LOC122327695 ncf4,LOC107704554,LOC107667893,LOC107559542 coding downstream 336853 13517128 ~ 13539026 (+)
LOC122327169 NA non-coding upstream 1101 13172733 ~ 13175326 (+)
G152200 LOC107568072,LOC107694706,LOC107704533,LOC107755337,LOC107659310,LOC107704541,LOC107659300,LOC107580119,LOC107655326,LOC107731186 non-coding upstream 14728 13101060 ~ 13161699 (+)
G152205 LOC107686478,LOC107670948 non-coding upstream 54736 13116438 ~ 13121691 (+)
LOC122327165 LOC107568072,LOC107694706,LOC107704533,LOC107575395,LOC107755337,LOC107659310,LOC107655326,LOC107711444,LOC107749630 non-coding upstream 70171 13101108 ~ 13106256 (+)
G152196 NA non-coding upstream 120541 13055348 ~ 13055886 (+)
LOC122327167 NA non-coding downstream 14465 13194740 ~ 13197659 (+)
G152518 LOC107696015,LOC107743582,LOC107721879,LOC107710542,LOC107687770 non-coding downstream 125463 13305738 ~ 13306358 (+)
G152519 NA non-coding downstream 126152 13306427 ~ 13306919 (+)
G152520 LOC107695509,LOC107701922 non-coding downstream 126769 13307044 ~ 13309072 (+)
G152521 NA non-coding downstream 129566 13309841 ~ 13310361 (+)
LOC122327162 NA other upstream 63694 13107506 ~ 13112733 (+)
LOC122327156 NA other upstream 77671 13067414 ~ 13098756 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other upstream 752505 12409306 ~ 12423922 (+)
G152043 LOC107741571 other upstream 830677 12345206 ~ 12345750 (+)
G152032 NA other upstream 881710 12293400 ~ 12294717 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other downstream 202878 13383153 ~ 13383777 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other downstream 224567 13404842 ~ 13509252 (+)
G152565 NA other downstream 237189 13417464 ~ 13418407 (+)
G152584 LOC107691164,LOC107602672,LOC107720370,LOC107559552,LOC107667897,LOC107736246,LOC107717652 other downstream 395463 13575738 ~ 13681947 (+)
LOC122327219 cunh10orf76,zgc:63733,LOC107551381,LOC107714152,LOC107588454,LOC107657489 other downstream 860446 14040721 ~ 14058580 (+)

Expression


Co-expression Network