G152727 (LOC107551379,LOC107657486)


Basic Information

Item Value
gene id G152727
gene name LOC107551379,LOC107657486
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14149176 ~ 14149494 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU226062
CTTGTTCGCTGGGTTCTGTCTCTGGTTTCTTGATGGTGAGGTCCAGCGGGGAGTCCTGGTCTGCCATGAGAAGCTTGCTGAGGACGGGATTCTGTGCGGAGGCAGCGGCGCCGGTACCGGGTGCGGAGGCGTCCGGCTCCAGCGAGGGCGCTTTCGGCAGGCTTTGGTCCTTGGTGCCGTTGGGCTGGGACTGGGGTTGGGGTACGTCCTGAGTTGAGCTGGTTTTTGAGGTATATTCGGCAGCGAACTGTCGGATCATTCGCTGCATGATCTCACGAGCCACTAGAGGAATGTGGGGGTCTGTAAATCTCGGGAGGTC

Function

NR:

description
PREDICTED: ligand-dependent corepressor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226062 True 319 lncRNA 0.60 1 14149176 14149494

Neighbor

gene id symbol gene type direction distance location
slit1b slit1b,LOC107588453,LOC107714155,LOC107551370,LOC107657487,LOC107679047 coding upstream 18842 14090550 ~ 14130334 (+)
arhgap19 arhgap19,LOC107679052,LOC107714154,LOC107706113,LOC107657488,LOC107588461,LOC107551371,LOC107551358 coding upstream 60476 14078950 ~ 14088700 (+)
LOC122327135 LOC107704540,LOC107717663 coding upstream 600747 13541190 ~ 13548429 (+)
LOC122327695 ncf4,LOC107704554,LOC107667893,LOC107559542 coding upstream 610150 13517128 ~ 13539026 (+)
pla2g6 pla2g6,LOC107667889,LOC107704553,LOC107602675 coding upstream 651951 13480546 ~ 13497225 (+)
si:ch211-126j24.1 si:ch211-126j24.1,LOC107550685,LOC107697062,LOC107588448 coding downstream 52634 14202128 ~ 14246917 (+)
klc4 klc4,LOC107753482,LOC107697060,LOC107550686,LOC102783141,LOC102306811,LOC102210354 coding downstream 99002 14248496 ~ 14270825 (+)
soul4 soul4,LOC107702255,LOC107588447,LOC107753484,LOC107697063 coding downstream 124391 14273885 ~ 14280638 (+)
mark1 mark1,LOC107588439,LOC107702252,LOC107698240 coding downstream 164946 14314440 ~ 14351800 (+)
elavl2 elavl2 coding downstream 230357 14379851 ~ 14392902 (+)
G152726 NA non-coding upstream 1512 14147217 ~ 14147664 (+)
G152725 NA non-coding upstream 1984 14146770 ~ 14147192 (+)
G152708 NA non-coding upstream 121262 14027491 ~ 14027914 (+)
G152707 NA non-coding upstream 149928 13993072 ~ 13999248 (+)
LOC122328230 NA non-coding upstream 181951 13967107 ~ 13967225 (+)
G152728 NA non-coding downstream 21669 14171163 ~ 14171473 (+)
G152729 NA non-coding downstream 22450 14171944 ~ 14172255 (+)
G152766 cp,LOC107736789,LOC107572087 non-coding downstream 313261 14462755 ~ 14464082 (+)
G152765 cp,LOC107732248,LOC107572087 non-coding downstream 316308 14465802 ~ 14468653 (+)
G152787 wwtr1,LOC107753487,LOC107588432,LOC107662944,LOC107572084 non-coding downstream 399319 14548813 ~ 14584619 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other upstream 70796 14071476 ~ 14078380 (+)
LOC122327219 cunh10orf76,zgc:63733,LOC107551381,LOC107714152,LOC107588454,LOC107657489 other upstream 90596 14040721 ~ 14058580 (+)
G152584 LOC107691164,LOC107602672,LOC107720370,LOC107559552,LOC107667897,LOC107736246,LOC107717652 other upstream 467229 13575738 ~ 13681947 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other upstream 639924 13404842 ~ 13509252 (+)
ptk7a ptk7a,LOC107702250,LOC107732247,LOC107588446,LOC107550662,LOC107697061 other downstream 134398 14283892 ~ 14313136 (+)
G152767 cp,LOC107572087,LOC107732248 other downstream 308655 14458149 ~ 14462660 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other downstream 537010 14686504 ~ 14691808 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other downstream 632888 14782382 ~ 14788693 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other downstream 1046422 15195916 ~ 15219764 (+)

Expression


Co-expression Network