G152787 (wwtr1,LOC107753487,LOC107588432,LOC107662944,LOC107572084)


Basic Information

Item Value
gene id G152787
gene name wwtr1,LOC107753487,LOC107588432,LOC107662944,LOC107572084
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14548813 ~ 14584619 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU226152
CTGGGGGTGTACGCCATCTCCCAGCCCGGCGGCAGCGGCAGCTCCTCGGCCACATCGAAGGACTGGTGCCGGGTGTGAGAGTGGTGTCTCCCGGGGCTCGGAGCGCCCAGCGCGGCCGTGGGCAGCTGCAGCGACGCCGGGGAGGAGTGCGAGCGGACGTGCGCCGCCTGGCAGCGCGGCGGGAGGCTGCCGGAGTCCGTGCTGGACTGTCGGGAGTGCGAGCCCGAGTCCGGCTCCCTAAAAAACGACTCGGGCAGATGCTTGTTCCTCCAGGAGCTGGGCTTGGGGTTCATCACCGAGTTAAACAGAGCCTCCAGATCCGTGTCGAGGTCTTTGGCGACATGGATCACCTGCTGGCCCGGTAACGGCTGGAGAGGGTTACTGCTCATTTTGTtcgatataaaaaataaacaaaccccGAAAACCGTATGAAAATACTCGGGTACAAAAAAGTAATCCTGGAAATTGTGGGAAGttctttggtAAAAGTAGTTTcgtcaacttaaaaaaaaagtccttcaAAGTCTTTAAAAAGTTGTCATAAAGCTACAAAAGTATATGTCATGTTGTCCCGCATCGAGAGTTTTGAGAGATTTTCCTCCGCTGCGTAACTTTGCGGCGTCCGCTGACGGAGTTTGTGTCCCGATGGAAAGTTTGTAAACTcaagctttt
>TU226153
CTGGGGGTGTACGCCATCTCCCAGCCCGGCGGCAGCGGCAGCTCCTCGGCCACATCGAAGGACTGGTGCCGGGTGTGAGAGTGGTGTCTCCCGGGGCTCGGAGCGCCCAGCGCGGCCGTGGGCAGCTGCAGCGACGCCGGGGAGGAGTGCGAGCGGACGTGCGCCGCCTGGCAGCGCGGCGGGAGGCTGCCGGAGTCCGTGCTGGACTGTCGGGAGTGCGAGCCCGAGTCCGGCTCCCTAAAAAACGACTCGGGCAGATGCTTGTTCCTCCAGGAGCTGGGCTTGGGGTTCATCACCGAGTTAAACAGAGCCTCCAGATCCGTGTCGAGGTCTTTGGCGACATGGATCACCTGCTGGCCCGGTAACGGCTGGAGAGGGTTACTGCTCATTTTGTtcgatataaaaaataaacaaaccccGAAAACCGTATGAAAATACTCGGGTACAAAAAAGTAATCCTGGAAATTGTGGGAAGttctttggtAAAAGTAGTTTcgtcaacttaaaaaaaaaTCCTTCAAAT

Function

symbol description
wwtr1 Predicted to enable transcription coactivator activity and transcription corepressor activity. Involved in regulation of gene expression. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; epithelial cell differentiation; and negative regulation of retinoic acid receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; digestive system; endocrine system; head; and mesoderm. Orthologous to human WWTR1 (WW domain containing transcription regulator 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: WW domain-containing transcription regulator protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226152 True 672 lncRNA 0.55 2 14548813 14549518
TU226153 False 523 lncRNA 0.58 3 14548813 14584619

Neighbor

gene id symbol gene type direction distance location
LOC122327136 tm4sf4,LOC107572086,LOC107691056,LOC107753508,LOC107662946 coding upstream 40649 14506280 ~ 14508164 (+)
tm4sf4 tm4sf4,LOC107572086,LOC107691056,LOC107753508,LOC107662946 coding upstream 56590 14489783 ~ 14492223 (+)
hps3 hps3 coding upstream 91816 14441534 ~ 14456997 (+)
elavl2 elavl2 coding upstream 155911 14379851 ~ 14392902 (+)
mark1 mark1,LOC107588439,LOC107702252,LOC107698240 coding upstream 197013 14314440 ~ 14351800 (+)
anos1b anos1b,LOC107588425,LOC107662924,LOC107707894,LOC107569245 coding downstream 131389 14716008 ~ 14771239 (+)
senp5 senp5,LOC107662925,LOC107706280,LOC107588423 coding downstream 187367 14771986 ~ 14779547 (+)
arhgef3 arhgef3,LOC107706277,LOC107588420,LOC107569252,LOC107705836 coding downstream 208177 14792796 ~ 14848187 (+)
tasora LOC107588417,LOC107662921,LOC107706275 coding downstream 272989 14857608 ~ 14884579 (+)
ip6k1 ip6k1,LOC107662926,LOC107705840,LOC107667830,LOC107570931 coding downstream 311259 14895878 ~ 14923894 (+)
G152765 cp,LOC107732248,LOC107572087 non-coding upstream 80160 14465802 ~ 14468653 (+)
G152766 cp,LOC107736789,LOC107572087 non-coding upstream 84731 14462755 ~ 14464082 (+)
G152729 NA non-coding upstream 376558 14171944 ~ 14172255 (+)
G152728 NA non-coding upstream 377340 14171163 ~ 14171473 (+)
G152727 LOC107551379,LOC107657486 non-coding upstream 399319 14149176 ~ 14149494 (+)
G152809 LOC107662927,LOC107588426,LOC107707893 non-coding downstream 123084 14707703 ~ 14711539 (+)
G152844 NA non-coding downstream 129594 14714213 ~ 14714879 (+)
LOC122327819 NA non-coding downstream 223224 14807843 ~ 14809151 (+)
G153039 NA non-coding downstream 384796 14969415 ~ 15070483 (+)
G153050 NA non-coding downstream 494227 15078846 ~ 15106926 (+)
G152767 cp,LOC107572087,LOC107732248 other upstream 86153 14458149 ~ 14462660 (+)
ptk7a ptk7a,LOC107702250,LOC107732247,LOC107588446,LOC107550662,LOC107697061 other upstream 235677 14283892 ~ 14313136 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other upstream 470433 14071476 ~ 14078380 (+)
LOC122327219 cunh10orf76,zgc:63733,LOC107551381,LOC107714152,LOC107588454,LOC107657489 other upstream 490233 14040721 ~ 14058580 (+)
G152584 LOC107691164,LOC107602672,LOC107720370,LOC107559552,LOC107667897,LOC107736246,LOC107717652 other upstream 866866 13575738 ~ 13681947 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other downstream 101885 14686504 ~ 14691808 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other downstream 197763 14782382 ~ 14788693 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other downstream 611297 15195916 ~ 15219764 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other downstream 1038474 15623093 ~ 15712086 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other downstream 1419945 16004564 ~ 16035615 (+)

Expression


Co-expression Network