LOC122327891


Basic Information

Item Value
gene id LOC122327891
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15773705 ~ 15893138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU226821
gcTTTAATGTGTAGAAGACATATTCTAAAAATAGTATATTAGTCTCAGAACTGTATAATTGGTTGACTCATTGACCTCTAGATTTCATTAATTTGCATATTGTGGGATTTAATAGCAGAACATACTAGCACACAGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTAGCCTCTTCTGCCATTTTCTCATACCCAGACTCACAATGGTAAGATCTTCTTGCTTCAAATTTCATTTCTCCTCTGAAGTAATCAGATGGTCTAAACACATGCTGGCCGAGTGGAACTTCACATCTAatctctgaaaacattttttttaactaaatttttttaatggttactCACAGTTTTTGAAACTATGGATCCAGTTCTCAAAACTCTacacacaaaatcacacacGACATGCAGAACATCACACATATCCTGCATTagcaaacacttattttaaaatgttatttttgagtAGTAACTCCACTCACAATATGTGTGTATCTC
>TU226822
GAGTAATCAGCATCTATCCAGAGGGGAAAACTATTTTCAAAGCTGAGAGAAAGTGATGATTACCTGCTCTGAGAGACACTGGCtcatttttacaaaagaaacCAGCAAATTATTCACGTGCCTAAATAGTGGAGATTGGGATCACATGACTGAGTGTGCAGAGATTAGTTGTGAAGTTCCACATAATCAGCATGTGTATTATCCAAGCGGTTACTTTAGAAGAGATTTGAGACTTGGagtgaaaaaaacatacagatgTGAGTCTGGATATCGTGAAACAGCAAAAGAAGCAACATGTACACCAGACGGATGGACGCCAAACCCACTGTGTGCTGttgcttattagtgtAGCGTGTCTGTACACGAAGACAACACAAGGATGAGATCCAGCCCTGGTTTTAATCTGATCAGTGAATCACAGGCGACAGAGGCACGTACAGGAAAATCGACAGCCTGTGGCTATtacataaagaaacaaacaaaccaaaaacaattacgtggaaataaaactgattacaaaaaaa
>TU226825
TCTGActtgatatttttttcctccaaatttAACTGATTAAAGCTCTGAAGTTATTTCTGTTCAAGACATAATTATGCAGAACTCAGGGCAAGATGAATCATGAGAAATGTTGAAACTATTACCGTAAATGCTTTGCCATTTGCAGGAGacaaatcaatcaaacaaaaaacataacatttagtAGCAGAACATACCAGCACACAGTGGGTTTGGCGTCCATCCGTCTGGTGTACATGTTGCTTCTTTTGCTGTTTCACGATATCCAGACTCAcatctgtatgtttttttcactCCAAGTCTCAAATCTCTTCTAAAGTAACCGCTTGGATAATACACATGCTGATTATGTGGAACTTCACAACTAATCTCTGAAACAggattaacattttttataacaacataaataacatttctctttaattttACCTGCACACTCAGTCATGTGATCCCAATCTCCACTATTTAGGCACGTGAATAATTTGCTGgtttcttttgtaaaaatgaGCCAGTGTCTCTCAGAGCAGGTAATCATCACTTTCTCTCCAGCTTTGAAAATAGTTTTCCCCTCTGGATAGATGCTGATTACTCCTAATTTAGTTGTCTTCAGCTCACAAGTTACTTCTGTTGAAGACATTATTATGCAGAACTAAGACTAAGGGTAAGAAAAGAACATTGAAAAAAACCGCACTGAAACTGTTACTGAAAATGCTTTGACTTTGCAGGAGAAAA
>TU226832
CAGGAGacaaatcaatcaaacaaaaaacataacatttagtAGCAGAACATACCAGCACACAGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTGGCCACTTCTGCTGTTTCTCGATATCCAGACTCACAACGGTAAGATCTTCTTGCTTCAAATTTCATTTCTCCTCTGAAGTAATTGTTTGGTTCAGACACATGCTGGTCAAGTGGAACTTCACATCTAATctc
>TU226835
TCTGActtgatatttttttcctccaaatttAACTGATTAAAGCTCTGAAGTTATTTCTGTTCAAGACATAATTATGCAGAACTCAGGGCAAGATGAATCATGAGAAATGTTGAAACTATTACCGTAAATGCTTTGCCATTTGCAGGAGacaaatcaatcaaacaaaaaacataacatttagtAGCAGAACATACCAGCACACAGTGGGTTTGGCGTCCATCCGTCTGGTGTACATGTTGCTTCTTTTGCTGTTTCACGATATCCAGACTCAcatctgtatgtttttttcactCCAAGTCTCAAATCTCTTCTAAAGTAACCGCTTGGATAATACACATGCTGATTATGTGGAACTTCACAACTAATCTCTGAAACAggattaacattttttataacaacataaataacatttctctttaattttACCTGCACACTCAGTCATGTGATCCCAATCTCCACTATTTAGGCACGTGAATAATTTGCTGgtttcttttgtaaaaatgaGCCAGTGTCTCTCAGAGCAGGTAATCATCACTTTCTCTCCAGCTTTGAAAATAGTTTTCCCCTCTGGATAGATGCTGATTACTCCTAATTTAGTTGTCTTCAGCTCACAAGTTACTTCTGTTGAAGACATTATTATGCAGAA
>TU226837
ATACCAGCACACAGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTGGCCTCTTCTGCTGTTTCTCGATATCCAGACTCACAACGGTAAGATCTTCTTGCTTCAAATTTCATTTCTCCTCTGAAGTCACTGTCTGGTCTAGACACATGCTGGCCGAGTGGAACTTCACAACGGTAAAATCTTGTTGTTTCAAATTTCATTTCTCCTCTGAAGTAATTGTTTGGTTCAGACACATGCTGGTCAAGTGGAACTTTACATCTAatctc
>TU226851
CCAGCACACAGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTAGCCTCTTCTGCCATTTTCTCATACCCAGACTCACAATGGTAAGATCTTCTTGCTTCAAATTTCATTTCTCCTCTGAAGTAATCAGATGGTCTAAACACATGCTGGCCGAGTGGAACTTCACATCTAatctctgaaaacattttttttaactaaatttttttaatggttactCACAGTTTTTGAAACTATGGATCCAGTTCTCAAAACTCTacacacaaaatcacacacGACATGCAGAACATCACACATATCCTGCATTagcaaacacttattttaaaatgttatttttgagtAGTAACTCCACTCACAATATGTGTGTATCTC
>TU226854
TCTGActtgatatttttttcctccaaatttAACTGATTAAAGCTCTGAAGTTATTTCTGTTCAAGACATAATTATGCAGAACTCAGGGCAAGATGAATCATGAGAAATGTTGAAACTATTACCGTAAATGCTTTGCCATTTGCAGGAGacaaatcaatcaaacaaaaaaacataacatttagtAGCAGAACATACCAGCACACAGTGGGTTTGGTGTCCATCCGTCTCGTGTACATGTGGCCACTTCTGCTGTTTCTCGATATCCAGACTCACAACGGTAAGATCTTCTTGCTTCAAATTTCATTTCTCCTCTGAAGTAATTGTTTGGTTCAGACACATGCTGGTCAAGTGGAACTTTACATCTAatctc
>XR_006247733.1
GAGAAAGTGATGATTACCTGCTCTGAGAGACACTGGCtcatttttacaaaagaaacCAGCAAATTATTCACGTGCCTAAATAGTGGAGATTGGGATCACATGACTGAGTGTGCAGAGATTAGTTGTGAAGTTCCACATAATCAGCATGTGTATTATCCAAGCGGTTACTTTAGAAGAGATTTGAGACTTGGagtgaaaaaaacatacagatgTGAGTCTGGATATCGTGAAACAGCAAAAGAAGCAACATGTACACCAGACGGATGGACGCCAAACCCACTGTGTGCTGttgcttattagtgtAGCGTGTCTGTACACGAAGACAACACAAGGATGAGATCCAGCCCTGGTTTTAATCTGATCAGTGAATCACAGGCGACAGAGGCACGTACAGGAAAATCGACAGCCTGTGGCTATtacataaagaaacaaacaaaccaaaaacaattacgtggaaataaaactgatta

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU226821 False 493 lncRNA 0.35 2 15785658 15834398
TU226822 False 524 lncRNA 0.40 3 15891038 15893138
TU226825 True 729 lncRNA 0.36 3 15832779 15852517
TU226832 False 227 lncRNA 0.41 2 15831898 15833147
TU226835 False 646 lncRNA 0.36 3 15832779 15852434
TU226837 False 266 lncRNA 0.43 2 15834027 15835437
TU226851 False 401 lncRNA 0.39 3 15773705 15834398
TU226854 False 370 lncRNA 0.38 3 15832779 15835437
XR_006247733.1 False 470 lncRNA 0.41 3 15891084 15893130

Neighbor

gene id symbol gene type direction distance location
aspm LOC107712224,LOC107699437,LOC107586448,LOC107556171,LOC107577714 coding upstream 21218 15735901 ~ 15752487 (+)
LOC122327180 LOC107593352,LOC107717987,LOC107679830,LOC107593351,LOC107717988,LOC107679833 coding upstream 484813 15220447 ~ 15288892 (+)
ddx59 ddx59,LOC107717990,LOC107578347 coding upstream 578833 15189827 ~ 15194872 (+)
scamp4 scamp4,LOC107717975,LOC107699425,LOC107719549,LOC107679840,LOC107586414 coding upstream 638109 15130400 ~ 15135596 (+)
ubxn6 LOC107717977,LOC107679838,LOC107593331,LOC107719551,LOC107699423,LOC107586413 coding upstream 653876 15114186 ~ 15119829 (+)
LOC122327226 LOC107556173 coding downstream 7994 15901132 ~ 15938182 (+)
LOC122327890 NA coding downstream 50595 15943733 ~ 15956310 (+)
LOC122327228 LOC107565915,LOC107709523,LOC107680281,LOC107565908,LOC107706842,LOC107680280 coding downstream 205593 16098731 ~ 16099807 (+)
trnaa-agc_18 NA coding downstream 229302 16122440 ~ 16122512 (+)
trnaa-agc_19 NA coding downstream 233398 16126536 ~ 16126608 (+)
G153239 NA non-coding upstream 6149 15766721 ~ 15767556 (+)
G153237 NA non-coding upstream 11037 15760505 ~ 15762668 (+)
G153227 LOC107741548,LOC107664650,LOC107712228,LOC107586421,LOC107699436 non-coding upstream 39052 15729777 ~ 15734653 (+)
G153182 NA non-coding upstream 257553 15468050 ~ 15516152 (+)
G153181 NA non-coding upstream 283437 15454912 ~ 15490268 (+)
G153320 NA non-coding downstream 87984 15981122 ~ 15981346 (+)
G153321 NA non-coding downstream 89454 15982592 ~ 15982822 (+)
G153364 NA non-coding downstream 357302 16250440 ~ 16250973 (+)
G153399 NA non-coding downstream 410593 16303731 ~ 16305650 (+)
G153418 NA non-coding downstream 527514 16420652 ~ 16481470 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other upstream 61619 15623093 ~ 15712086 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other upstream 553941 15195916 ~ 15219764 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other upstream 985012 14782382 ~ 14788693 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other upstream 1081897 14686504 ~ 14691808 (+)
G152767 cp,LOC107572087,LOC107732248 other upstream 1311045 14458149 ~ 14462660 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other downstream 111426 16004564 ~ 16035615 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other downstream 184443 16077581 ~ 16078895 (+)
LOC122327131 NA other downstream 270245 16163383 ~ 16171629 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other downstream 424249 16317387 ~ 16386176 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other downstream 600564 16493702 ~ 16499413 (+)

Expression


Co-expression Network