LOC122327825 (LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842)


Basic Information

Item Value
gene id LOC122327825
gene name LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16077581 ~ 16078895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU227020
ATTTGATTATAATATCTGTGGATCGATACATTGCTGTGAATGACCCTTTGTTATATCCACTGAAGGTCAATACTAATAGAGTTGTTGTTTCTATTGTTGTAAACTGGttattctctttcttttattcattttacctTTTGTATGAGTCCATAATCTACCCAGAAAGAACCCACTCATGTATTGGAGAATGTATACTTTATGTCAAGTTGGAATATCTAATATTAGATTCCTTTGTTTGTTTAGTGGCACCTTGTTGTGTAATTGTTTCTTTATATgtgaaaatctgttttgtagCAAATTATCAAGCTAAGCAATTAAATTCAGCCACAGACAAAAAGGCTAAATCAGAAAAGAAGGCTGCAAGAACCTTAGGGATTGTAGTCCTGGTTTATCTTCTTTGCTGGGCACCATATTATTTAGTTACTCTTTCCCTTGGGCATGATGAAAATGATGCtcttataattaatttaatgcaatggATTGTATGCATGAATTCATTAATGAATCCACTTATCTatgcaatgttttataaatggtTTAGGCTATCAGCAAAATACATCTTGACATTGAAAATATTGGAACCTTCATCTGCGTAC
>XM_043223458.1
CTGTGGATTTGTTAGGAACTATATCCGACAGCCCTAACTTAATAAAAACCCACAAATTGGGTAttttttgcacacatttttctttagaaaatggtgacttttaattgtgtattaacaaacaaaaaaaatattacaatatagaTCAGATGAGGTCTAAAAGGtctatgaatattaaattagaGGGTGGGTTGACAGCTAAATATTCGAACTTCACAGTAAGGGAGGAGGTTACAGAGTTTGCAAAAGTATAAAACCGAGTCATATTAGTGGCAAGAATCCTCACACAGAGCCAACTCTGCAAGATCGATCCATCACGAAAATGTCCAACTGGGGAGTGACTAACACAGaaaatctatctatccagtACTGCTTTCCAGGCAACAATTTGTCTTGTACCAAAAGTATCAGACCAGAAGCTGAGTACATTGTTGTGTACATTTTCGTTTCTGTAACATCAGTGTTCACTGTGTTTCTGAACTTGTTGGTGATTGTCTCCATCTCACACTTCAAGCAGCTCCACACTCCGACCAATGTGCTGATCCTCTCTCTGGCCGTGGCTGATCTGATCGCAGGACTGATTCTCATGCCAGTGCAGGGAATGAAACTCATTGAGCCATGCTGGTACTTTGGAGAAATATTCTGTTCAATATTTCCTCTTATTCTCTATGTGGTTGTTACAGCATCTCTTGGAAATTTGATTATAATATCTGTGGATCGATACATTGCTGTGAATGACCCTTTGTTATATCCACTGAAGGTCAATACTAATAGAGTTGTTGTTTCTATTGTTGTAAACTGGttattctctttcttttattcattttacctTTTGTATGAGTCCATAATCTACCCAGAAAGAACCCACTCATGTATTGGAGAATGTATACTTTATGTCAAGTTGGAATATCTAATATTAGATTCCTTTGTTTGTTTAGTGGCACCTTGTTGTGTAATTGTTTCTTTATATgtgaaaatctgttttgtagCAAATTATCAAGCTAAGCAATTAAATTCAGCCACAGACAAAAAGGCTAAATCAGAAAAGAAGGCTGCAAGAACCTTAGGGATTGTAGTCCTGGTTTATCTTCTTTGCTGGGCACCATATTATTTAGTTACTCTTTCCCTTGGGCATGATGAAAATGATGCtcttataattaatttaatgcaatggATTGTATGCATGAATTCATTAATGAATCCACTTATCTatgcaatgttttataaatggtTTAGGCTATCAGCAAAATACATCTTGACATTGAAAATATTGGAACCTTCATCTGCGTACTTTAATCTGTTCCCAGAAGAGAAATGA

Function

NR:

description
PREDICTED: trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227020 False 596 lncRNA 0.32 1 16078273 16078868
XM_043223458.1 True 1315 mRNA 0.36 1 16077581 16078895

Neighbor

gene id symbol gene type direction distance location
LOC122327890 NA coding upstream 121271 15943733 ~ 15956310 (+)
LOC122327226 LOC107556173 coding upstream 139399 15901132 ~ 15938182 (+)
LOC122327224 NA coding upstream 191336 15879254 ~ 15886245 (+)
aspm LOC107712224,LOC107699437,LOC107586448,LOC107556171,LOC107577714 coding upstream 325094 15735901 ~ 15752487 (+)
LOC122327180 LOC107593352,LOC107717987,LOC107679830,LOC107593351,LOC107717988,LOC107679833 coding upstream 788689 15220447 ~ 15288892 (+)
LOC122327228 LOC107565915,LOC107709523,LOC107680281,LOC107565908,LOC107706842,LOC107680280 coding downstream 19836 16098731 ~ 16099807 (+)
trnaa-agc_18 NA coding downstream 43545 16122440 ~ 16122512 (+)
trnaa-agc_19 NA coding downstream 47641 16126536 ~ 16126608 (+)
trnaa-agc_20 NA coding downstream 49015 16127910 ~ 16127982 (+)
trnaa-agc_21 NA coding downstream 50391 16129286 ~ 16129358 (+)
G153321 NA non-coding upstream 94759 15982592 ~ 15982822 (+)
G153320 NA non-coding upstream 96235 15981122 ~ 15981346 (+)
G153236 NA non-coding upstream 240827 15835260 ~ 15836754 (+)
G153231 NA non-coding upstream 246490 15827770 ~ 15831091 (+)
G153233 NA non-coding upstream 263495 15795830 ~ 15814086 (+)
G153364 NA non-coding downstream 171545 16250440 ~ 16250973 (+)
G153399 NA non-coding downstream 224836 16303731 ~ 16305650 (+)
G153418 NA non-coding downstream 341757 16420652 ~ 16481470 (+)
G153434 NA non-coding downstream 422859 16501754 ~ 16502104 (+)
LOC122327176 NA non-coding downstream 443735 16522630 ~ 16526808 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other upstream 41966 16004564 ~ 16035615 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other upstream 365495 15623093 ~ 15712086 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other upstream 857817 15195916 ~ 15219764 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other upstream 1288888 14782382 ~ 14788693 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other upstream 1385773 14686504 ~ 14691808 (+)
LOC122327131 NA other downstream 84488 16163383 ~ 16171629 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other downstream 238492 16317387 ~ 16386176 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other downstream 414807 16493702 ~ 16499413 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other downstream 521735 16600630 ~ 16749928 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 1320410 17399305 ~ 17419244 (+)

Expression


Co-expression Network