LOC122327176


Basic Information

Item Value
gene id LOC122327176
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16522630 ~ 16526808 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU227198
GCGGGTGTCAAAACAAACCGGAGCATGTTGGGCCTGTATCTACGGAAGTGCAAAAAACAACCACTAGATTCAGGGCCGCGATCTACACAGTCCACCAGAAACGTCTTGTCTTCTGCGGACGAGTGCAAGGCTCGCAAAAGAAATATGAATGGCAACAATGGAGGACTGGATTGATGTGTTGACACGGCGATACCAGGCGTTCTGTCTCTCCTCCTCCAGGGTTTGAAGTCCAGCCAACAGCGTGTGAAGACTTTATATAAACaggtttaatatttcattagcTGCACAATAGGTGCTGAGCACGTTTTTAGGATACAGTAGTTCACAGCACGACACAAAGAGCCTATGATAAATCAGCAATTAAATGAatagacaaataaatatttgactgCATTTTacctttgaaataaataaataaatgggtcTGATCAGAGGAAATTACTGCAATCAATTTTATTGTATAGACAAATGAACGAACGAACAAATgatcaataaatgtaattccTCTGAAATAacgtaaaatattttactgaacTGTAATATGAgccccaaaataaaattatctGTAATTTGCAttacacattttacttttacatagtatttaattatatatatatatatatatatata
>XR_006247619.1
AGAGGCACGGTCAACACGTGCAACATGCCTTATCAGCTGTGGAAATTTACCCTCAGCATGCCTGTTGCCAAACAAACAGACCGAAAAGCTAGGCTCATTTGTAGCGGGTGTCAAAACAAACCGGAGCATGTTGGGCCTGTATCTACGGAAGTGCAAAAAACAACCACTAGATTCAGGGCCGCGATCTACACAGTCCACCAGAAACGTCTTGTCTTCTGCGGACGAGTGCAAGGCTCGCAAAAGAAATATGAATGGCAACAATGGAGGACTGGATTGATGTGTTGACACGGCGATACCAGGCGTTCTGTCTCTCCTCCTCCAGGGTTTGAAGTCCAGCCAACAGCGTGTGAAGACTTTATATAAACaggtttaatatttcattagcTGCACAATAGGTGCTGAGCACGTTTTTAGGATACAGTAGTTCACAGCACGACACAAAGAGCCTATGATAAATCAGCAATTAAATGAatagacaaataaatatttgactgCATTTTacctttgaaataaataaataaatgggtcTGATCAGAGGAAATTACTGCAATCAATTTTATTGTATAGACAAATGAACGAACGAACAAATgatcaataaatgtaattccTCTGAAATAacgtaaaatattttactgaacTGTAATATGAgccccaaaataaaattatctGTAATTTGCAttacacattttacttttacatagtatttaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227198 False 630 lncRNA 0.36 3 16522733 16526808
XR_006247619.1 True 710 lncRNA 0.39 3 16522630 16526785

Neighbor

gene id symbol gene type direction distance location
grip2b LOC107719945,LOC108436697,LOC107720331 coding upstream 45019 16382185 ~ 16477611 (+)
sec13 sec13,LOC107719942,LOC107557974,LOC107691189,LOC107657312 coding upstream 185512 16329725 ~ 16337118 (+)
LOC122328055 NA coding upstream 278088 16241163 ~ 16244542 (+)
LOC122327679 NA coding upstream 285609 16233607 ~ 16237021 (+)
LOC122327230 LOC107574244,LOC106946732 coding upstream 367079 16153142 ~ 16155551 (+)
manf manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486 coding downstream 223905 16750713 ~ 16752754 (+)
rbm15b rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039 coding downstream 226095 16752903 ~ 16756930 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding downstream 513854 17040662 ~ 17069967 (+)
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding downstream 827009 17353817 ~ 17369897 (+)
rnf13 rnf13,LOC107551383,LOC107568264,LOC106613488 coding downstream 844347 17371155 ~ 17388079 (+)
G153434 NA non-coding upstream 20526 16501754 ~ 16502104 (+)
G153418 NA non-coding upstream 41160 16420652 ~ 16481470 (+)
G153399 NA non-coding upstream 216980 16303731 ~ 16305650 (+)
G153364 NA non-coding upstream 271657 16250440 ~ 16250973 (+)
G153321 NA non-coding upstream 539808 15982592 ~ 15982822 (+)
LOC122328065 NA non-coding downstream 8211 16535019 ~ 16545350 (+)
G153501 NA non-coding downstream 28125 16554933 ~ 16556610 (+)
G153504 NA non-coding downstream 39244 16566052 ~ 16566670 (+)
G153568 NA non-coding downstream 230987 16757795 ~ 16758127 (+)
G153569 NA non-coding downstream 232337 16759145 ~ 16759580 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other upstream 23217 16493702 ~ 16499413 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other upstream 136454 16317387 ~ 16386176 (+)
LOC122327131 NA other upstream 351001 16163383 ~ 16171629 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other upstream 443735 16077581 ~ 16078895 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other upstream 487015 16004564 ~ 16035615 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other downstream 73822 16600630 ~ 16749928 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 872497 17399305 ~ 17419244 (+)
G153741 LOC107661227 other downstream 1399543 17926351 ~ 17927244 (+)

Expression


Co-expression Network