G153501


Basic Information

Item Value
gene id G153501
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16554933 ~ 16556610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU227275
tttctctttaaatacatcactttattttttaagctttagCAGATTGTTACAAACCTGAACACGGTGAAGTTAACACAAGATACAGATAAAATTAACTGTGTATTTCAATACTTCTGCTGGTATACAACGACCAACTTCATGTTGTTTCTTCATGATAGTTATTATAAtactacagaaaaaaatgtatgtaaacaaaacactgcATGACCCTAAATCTTTGAAATGGGTTGAGAAATTTATTTTCAGAAGTTTTTTTTCCGGTATTGACATTGTAATGAgtttgtaaatttaaaatagcaCTGCATACAGAGACAAAACTTTAACAGCAAATACTATATAAAAGACATAGTGATTAAATAGCCAAACGCATTAACGTCAAACACACTGATAAGAATGTTCATGAAGACACTGATATGACACGGTGGTGATGGGGAGACCGTGTTTCAAGTCTggtaaaactacattaaaaataacatgtatgAACTACATCAAAAGTATTGGTAGATAGTCAGAGTTGTAGTACTGGAGTCGTCTCTAGTAATGGTTAGATACAATAGTGGTTCTTGGCCACTAATAATACACATCGTAATATAAGGATGATAGCATACACAGCATGTTTGAGAGTGGTCCGATGTagagtataaataaaaagatattctAAAGCAGCAATAACCTGAAGCATTTGCCGCTTTTCCACTATCATACTATCCACTATCAGATAGTGGAAAAGCTCCTATTGAGTATCAATAGCAATCTCAGCTAGCCAAACGTAACAGAATCTCAGAGAAGGTGCAGAGTAAATCCCAGCAGAGCGGTTAGGACTTCCATAATCTTCAGTGACTCTGTTCCCATAGCTGagttcttttgtctttcagatgGTTTTTCAGGCTTTTCTGTTGGCTTGTCGGGCTTTTCTGTAAGAATAAAAGGTATAATGTATAGAAAATGGATTGTTAAAAAAGATGGAGAACACATTTATACTTCCTTCCACTGCAAATAACTGATTAAAAGGAAACctattagaaaaacaaacacctgAACATGCATTAGTGTATGTTATATGTTGCAGTGTACTACGTAAAATTATGGAAATTATCTTTTGAAAAAGGATTAGGACTAATACTTTATTAGTAGTATAATTAAGGTTAGAGAGCATGTATCAGTGTTCAGtgtttaaatcataatttaacACACAAGGACTTCACGTATACCTTTGATAAAAAGCTGCATTCTCTTTTCCTCATTTGACTCTTGTAAAAAACAAGTGTAGATTCCTGCGTGAATGAAATCCAGATCTTTCAGTTTGATGGAGTAGTTTCCCTTTGCATACTCTGAAGGGAAACTTTTTGCTCGATTCTTGAATATTTCCTTCTGATTTAGTATTGAGggtttttcatttataatattaagcACATTTACACTCTCATTCAGTCGCCAAAACACATCAGTACTTGGCTGTTGATTGACATATAAGCAAGGCAAGATGACGGAGCCTCCAACAACACCGTCAAACCGATTCGGAGAGTCCTGCAGAGACACTGGGAAAAGAGAAACAACTTTACTTTAATCAAACTGCAGCGAACATAAAACCTTTTAACAGATGTCAA
>TU227276
tttctctttaaatacatcactttattttttaagctttagCAGATTGTTACAAACCTGAACACGGTGAAGTTAACACAAGATACAGATAAAATTAACTGTGTATTTCAATACTTCTGCTGGTATACAACGACCAACTTCATGTTGTTTCTTCATGATAGTTATTATAAtactacagaaaaaaatgtatgtaaacaaaacactgcATGACCCTAAATCTTTGAAATGGGTTGAGAAATTTATTTTCAGAAGTTTTTTTTCCGGTATTGACATTGTAATGAgtttgtaaatttaaaatagcaCTGCATACAGAGACAAAACTTTAACAGCAAATACTATATAAAAGACATAGTGATTAAATAGCCAAACGCATTAACGTCAAACACACTGATAAGAATGTTCATGAAGACACTGATATGACACGGTGGTGATGGGGAGACCGTGTTTCAAGTCTggtaaaactacattaaaaataacatgtatgAACTACATCAAAAGTATTGGTAGATAGTCAGAGTTGTAGTACTGGAGTCGTCTCTAGTAATGGTTAGATACAATAGTGGTTCTTGGCCACTAATAATACACATCGTAATATAAGGATGATAGCATACACAGCATGTTTGAGAGTGGTCCGATGTagagtataaataaaaagatattctAAAGCAGCAATAACCTGAAGCATTTGCCGCTTTTCCACTATCATACTATCCACTATCAGATAGTGGAAAAGCTCCTATTGAGTATCAATAGCAATCTCAGCTAGCCAAACGTAACAGAATCTCAGAGAAGGTGCAGAGTAAATCCCAGCAGAGCGGTTAGGACTTCCATAATCTTCAGTGACTCTGTTCCCATAGCTGagttcttttgtctttcagatgGTTTTTCAGGCTTTTCTGTTGGCTTGTCGGGCTTTTTTCCACTGCAGAAATGTGAAGCCAAAACATCTCGTCATGAAGGGAACCCACACACAATCGTGACAAGTTTTTATAGCATCAAATAACTGATTAAAAGGAAACctattagaaaaacaaacacctgAACATGCATTAGTGTATGTTATATGTTGCAGTGTACTACGTAAAATTATGGAAATTATCTTTTGAAAAAGGATTAGGACTAATACTTTATTAGTAGTATAATTAAGGTTAGAGAGCATGTATCAGTGTTCAGtgtttaaatcataatttaacACACAAGGACTTCACGTATACCTTTGATAAAAAGCTGCATTCTCTTTTCCTCATTTGACTCTTGTAAAAAACAAGTGTAGATTCCTGCGTGAATGAAATCCAGATCTTTCAGTTTGATGGAGTAGTTTCCCTTTGCATACTCTGAAGGGAAACTTTTTGCTCGATTCTTGAATATTTCCTTCTGATTTAGTATTGAGggtttttcatttataatattaagcACATTTACACTCTCATTCAGTCGCCAAAACACATCAGTACTTGGCTGTTGATTGACATATAAGCAAGGCAAGATGACGGAGCCTCCAACAACACCGTCAAACCGATTCGGAGAGTCCTGCAGAGACACTGGGAAAAGAGAAACAACTTTACTTTAATCAAACTGCAGCGAACATAAAACCTTTTAACAGATGTCAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05164 Influenza A
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU227275 True 1607 lncRNA 0.34 2 16554933 16556610
TU227276 False 1607 lncRNA 0.35 2 16554933 16556610

Neighbor

gene id symbol gene type direction distance location
grip2b LOC107719945,LOC108436697,LOC107720331 coding upstream 77322 16382185 ~ 16477611 (+)
sec13 sec13,LOC107719942,LOC107557974,LOC107691189,LOC107657312 coding upstream 217815 16329725 ~ 16337118 (+)
LOC122328055 NA coding upstream 310391 16241163 ~ 16244542 (+)
LOC122327679 NA coding upstream 317912 16233607 ~ 16237021 (+)
LOC122327230 LOC107574244,LOC106946732 coding upstream 399382 16153142 ~ 16155551 (+)
manf manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486 coding downstream 194103 16750713 ~ 16752754 (+)
rbm15b rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039 coding downstream 196293 16752903 ~ 16756930 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding downstream 484052 17040662 ~ 17069967 (+)
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding downstream 797207 17353817 ~ 17369897 (+)
rnf13 rnf13,LOC107551383,LOC107568264,LOC106613488 coding downstream 814545 17371155 ~ 17388079 (+)
LOC122328065 NA non-coding upstream 9583 16535019 ~ 16545350 (+)
LOC122327176 NA non-coding upstream 28125 16522630 ~ 16526808 (+)
G153434 NA non-coding upstream 52829 16501754 ~ 16502104 (+)
G153418 NA non-coding upstream 73463 16420652 ~ 16481470 (+)
G153399 NA non-coding upstream 249283 16303731 ~ 16305650 (+)
G153504 NA non-coding downstream 9442 16566052 ~ 16566670 (+)
G153568 NA non-coding downstream 201185 16757795 ~ 16758127 (+)
G153569 NA non-coding downstream 202535 16759145 ~ 16759580 (+)
G153583 NA non-coding downstream 248572 16805182 ~ 16805608 (+)
G153610 NA non-coding downstream 515904 17072514 ~ 17072936 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other upstream 55520 16493702 ~ 16499413 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other upstream 168757 16317387 ~ 16386176 (+)
LOC122327131 NA other upstream 383304 16163383 ~ 16171629 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other upstream 476038 16077581 ~ 16078895 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other upstream 519318 16004564 ~ 16035615 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other downstream 44020 16600630 ~ 16749928 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 842695 17399305 ~ 17419244 (+)
G153741 LOC107661227 other downstream 1369741 17926351 ~ 17927244 (+)

Expression


Co-expression Network