G153647 (LOC107568254)


Basic Information

Item Value
gene id G153647
gene name LOC107568254
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17441873 ~ 17442179 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU227470
GAAACTAACAAGACAGATTAAGAGGGTCTGCACAAACCGCAGACATGGATAAAGGGAAATGCTTTCCTGAAAAATATGTGCTGAGATGGCAGAAAATGAAGAGAGCATTGAAAGAGGAGACGTTACTGGTATGCATGTAGGAGCCGAAGGTGAAAGAGCAGTTCTGTACGTCGAAAGGGAAACTGAAGATCTGTAGGTTACAGGCGCTAACCAGCCTCAACATCCTGTCATAGCGGATGTGGCCCGTGTGGTTCACATACACATACGGACAGGCCTGAGAGACATCGTCATCCACACTAAACAGGAG

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227470 True 307 lncRNA 0.47 1 17441873 17442179

Neighbor

gene id symbol gene type direction distance location
rubcn LOC107720396,LOC107732676,LOC107701215,LOC107568258,LOC107679062,LOC107551360 coding upstream 2959 17422118 ~ 17438914 (+)
rnf13 rnf13,LOC107551383,LOC107568264,LOC106613488 coding upstream 53794 17371155 ~ 17388079 (+)
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding upstream 71976 17353817 ~ 17369897 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding upstream 371906 17040662 ~ 17069967 (+)
rbm15b rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039 coding upstream 684943 16752903 ~ 16756930 (+)
dynlt2b tctex1d2,LOC107701222,LOC107732663,LOC107744197,LOC107551376,LOC107565470 coding downstream 48565 17490744 ~ 17492655 (+)
hykk.2 hykk,hykk.2,LOC107732649,LOC107744196,LOC107551378 coding downstream 67549 17509728 ~ 17520426 (+)
LOC122328058 hykk,hykk.2,LOC107732649,LOC107744196,LOC107551378 coding downstream 73951 17516130 ~ 17520426 (+)
LOC122327646 ephb3,LOC107668659,LOC107687281,LOC107732650,LOC107744192 coding downstream 254696 17696875 ~ 17741017 (+)
G153645 NA non-coding upstream 21929 17419724 ~ 17419944 (+)
G153610 NA non-coding upstream 368937 17072514 ~ 17072936 (+)
G153583 NA non-coding upstream 636265 16805182 ~ 16805608 (+)
G153569 NA non-coding upstream 682293 16759145 ~ 16759580 (+)
G153568 NA non-coding upstream 683746 16757795 ~ 16758127 (+)
G153653 NA non-coding downstream 29721 17471900 ~ 17472846 (+)
G153654 LOC103364560,LOC102213549,LOC105896408 non-coding downstream 31062 17473241 ~ 17474600 (+)
G153737 NA non-coding downstream 441434 17883613 ~ 17883921 (+)
G153740 NA non-coding downstream 444467 17886646 ~ 17886876 (+)
G153743 NA non-coding downstream 497702 17939881 ~ 17940860 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other upstream 22629 17399305 ~ 17419244 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other upstream 691945 16600630 ~ 16749928 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other upstream 942460 16493702 ~ 16499413 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other upstream 1055697 16317387 ~ 16386176 (+)
LOC122327131 NA other upstream 1270244 16163383 ~ 16171629 (+)
G153741 LOC107661227 other downstream 484172 17926351 ~ 17927244 (+)

Expression


Co-expression Network