LOC122327050 (LOC107570370,LOC107664859,LOC107741528,LOC107664867,LOC107570371)


Basic Information

Item Value
gene id LOC122327050
gene name LOC107570370,LOC107664859,LOC107741528,LOC107664867,LOC107570371
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12260109 ~ 12268021 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222223.1
TACAAACCACCAGCCATGAGAGCTGTTGTGCTTGCCTTGACTCTAGCCTTCGTGGcgaGTCAACAAATTAACCATGTTCCTGAGTTTGCCCCTGATAAGACCTATGTATACAAGTATGAGGCTCTGCTCTTGGGTGGTCTTCCTCAAGAAGGTCTGGCTAGAGCAGGTATAAAAGTCAACAGCAAGGTTCACCTCAGTGCCATGACCGAGAACACCTTCCTCATGAAGCTCACAGAGCCTCTAATCCATGAGTATGCTGGCATTTGGCCCAAGGATCCATTTGTTCCTGCCTCTAAGCTCACTGCGGCACTGGCTGCTCAGCTTCAGATTCCCATCAAGTTTGAGTATGCCAATGGTGTGGTTGGAAAGGTATTTGCCCCAGAAGCAGTCTCCCCTACTGTACTGAACTTGCACAGAGGTATCCTCAACATTCTTCAGCTCAACCTCAAGAAGACCCAGAACATCTATGAGCTGCAAGAGGCTGGATCTCAGGGAGTGTGCAGGACTCACTATGTCATCAGTGAGGATCCAAAAACCAAACACATTACTGTCACCAAGTCTAAGGATCTGAAGCACTGCCAGGAGAGAATTATAAAGGACACTGGCTTAAGACTGGCTGAAAAATGTGTGGAATGCACAAAGAGGATCAAGAGTCTGATTGAAACTGCAACTTACAACTACATCATGAAACCCGCTGCCACTGGTGCTCTGCTTGCTGAGGCAACAGTTGAGGAAGTGCATCAGTTCTCACCCTTCAGTGAGATTCATGGTGCTGCCCAGATGGAAGCAAAACAAACCTTGGAATTTTTAGAGAATGAAAAGACCCCTGTTGTTCCAATCAAAGCTGATTACTTGGCCCGTGGATCCCTGCAGTATGAGTTTGCAACTGAGATTCATCAGATTCCCATTCAACTCATGAAGATCAGTGATCCAAAAGCACAGATTGTGGAGGTCCTGAAGCACTTGGTTGTAAATAATGTGGCCATGGTCCACGATGATGCACCACTTAAGTTTCTTCAGCTCGTCCAGCTCCTGCGTGCTGCCACCTTGGAGAACTTTGAGGCTGTCTGGGCTCAGTTCAAGAATGAACCAGTTTACAGGCGCTGGATTTTGGATGCTCTTCCTGCTGTTGGCACACCACTCATTATAAAACTGCTCAAGGAGAAGTTCCTGGCTGGTGAACTTACCCTTCCAGAGTTCATTCAGGCTATTGTGGTTGCTCTGCAAATGGTCACGGTTGACCTGGAAACCATCCAGTTGACTGCTAGTTTGGCTATGCATGAGAAAACTGCCACAATCCCAGCTCTCCGTGAAGTTGTCATGCTTGGATATGGTTCCATGATTGCCAAGCACTGTGTTGAAGTTCCCACTTGCTCTGCTGATCTCCTTAGGCCCATCCATGATACTGCTGCAGAGGCCATTGCAAAAAATGACATTCCTGAAATCACTTTGGCTTTGAAAGTTCTGGGCAATGCTGGTCACCCTGCTAGTCTTAAACCCATCATGAAGCTCCTGCCTGTACTAAAAACTGCAGCTGCTGCTCTGCCCATTAGAGTCCAGGTTGACGCCGTCTTGGCCCTGAGGAACATTGCCAAGAAAGATCACAAACTGGTTCAGCCAGTGGCCTTGCAGCTTGCATTGGACAGGGCTCTCCATCCAGAAGTGCGCATGGTTGCTTGTATTGTGTTGTTTGAGACCAAGCCATCAGTGGCTCTTATGTCAAGTCTTGCTGGTGCTTTGAAGACTGAAACTAACATGCAGGTTGCAAGCTTCATCTATTCCCACATCAAGTCCTTGACCAGAATCACTGCTCCTGACATGGCAGCTGTTGCTGGTGCAGCTCATGTTGCTATCAAGCTTTTAAGTCCTAAGCTGGACAGACTTAGTTTCCATTTCAGCAGAGCCCTCAAGATTGACATCTATCATAGTCCTCTTATGGTTGGAGCAGCTGGTAGTGCCTACATTATCAATGATGCTGCTACCATCCTGCCCAGAGCTGTTGTAGCAAAAACACGTGCTTATCTGGCTGGAGCTGCTGCTGATGTTCTTGAGATTGGTGTGAGAACTGAAGGAATCCAGGAGGCTCTTCTGAAATCTCCTGCTGCAGAACAAAATGTTGATCGTATCACAAAGATTAAGCGCACACTGAGAGCACTTATAAATTGGAAGGCTCTGCCAACCAGTCAGCCACTGGCTTCAGCCTACATCAAACTGTTTGGACAGGAGGTGGCTTTTGCCACAATTGACAGGACCATCATTGAACACGCAATATCTCTTGCCACTGGACCCAAACCACGTGAACTGTTGAAGGCAGCTCTGAAAGCTTTGCAGGAAGGAATTGCCTTGCAGCGTGCCAAACCCCTGCTTATAGCTGAAGTGCGCCGAATCTGGCCAACAGCAGTTGGTTTGCCCATGGAGCTTAGTATGTACTCTGCTGTTGTTGGTACTGCATCCATCAATGTTCAGGCGACCATTACACCTCCCCTCCCTGAGCAGATTGAGACCATGACCCTTGAGCAACTTAAGAACACTAATGTTCAACTCCAGGCTGAAGCTAGACCAAGtattgCTATACAGAAATTTGCTGTGATGGGAGTAAACACTGCTTTGATCCAAGCTGCCGTTATGGCCAAAGGAGAAATCCGTATAATTGCTCCTGGAAAAGTGGCTGCAAAAGCAGATATTCTCAAGGGCAATTACAAAGTTGAGGCTCTGCCTGTTGAGCTTCCTGAACATATTGCTGCTGTAAGCTTTGAGACTCTCGCTGTGGCCAGAAACATCGAAAATCCCACTGCTGAGAGAATTGTTCCATTGGTACCTGAGATGTCTGTGCAAAGCTCTGTAAGCCACACATGTACAGTCCTTGATAATGACATGTCAGCTGAGTCTGCTGTAAGAGCACCTGCTCCATTCCACCAGACTCTCTGTGCTGCTGTCCCATACATCGAAATCAAGGGATGCGTTGAGGTGCACTCTCACAATGCTGCTTTTATCAGAAATGCTCCTCTGTACTACATACTTGGGCAACACTCAGCCCGTGCTGCACTGTCAAGAGCTGAAGGTCCTGCAGTTGAAAGACTGGAGCTTGAAGTTCAAGTTGGTCCTAGAGCTGCTGAGAGGCTTCTTAAGCAAATCAGTCTCATTGATGAGGAGACTCCAGAAGGAAAGGCTTTCCTGTTGAAACTGAAGGAAATCCTGGAGACTGAAGATAAAAACAGACCCGTCTCTTCTGAAAGCAAAAGCAGTAGCAGCAGCCGTAttatcagcagcagcagcagcagcagttcaGGCTCTTCCATGTCCAGCTCTCATGTGACAGAGACTGCCAATCTCATGGAACCCTTCAAGAAGTTCCACAAAGATCAGCACATGACACACCATGGAGACTCAAAGAGAGTTAGCAGTGGAAGCTCTGCATCCAGCTTTGAGAATATTCGGAAACAGACTAAATATCTTGGGAATACTGTTTCACCTGTTGTTGCTATCATTGCCCGAGCTGTTAGAGTGGATCATAAATTACTGGGCTACCAGCTTGCTGCTTTCTTTGATAAGCCAACTGCAAGAGTGCAGCTCATTGTTTCTTCCATTGCTGAGAATGACAACTGGAAGTTGTGTGCTGATGGTGTCCTGCTGAGCAAGCACAAAGTCACTACCAAGGTTGCTTGGGGTGCAGAGTGCCAACAATATGCAGTCACTACTAAAGCTGAGGCCGGAATCCTTGGAGAATACCCTGCTATCCGTCTAGAGTGGGAATTGGAAAGGCTTCCAAATATTGTCACCTCCTATGCCAAAAAGTTGTCTAAATACATACCTAAGGCGGCTTTACAGACAGGCTTCAAGCTTGAAAGAGCCACAAACAAGGAGAACGAGATCGACCTGACTGTGGCCTTGCCAACTCAGAGGTCCCTGAATGTCATTGTTAGGATTCCAGAGATGACACTGTCAAGGATGGCTATTCATCTCCCTGTCACTGTTCCCATCAATCCAGATGGAagtatttcaattaattttgatCAGGACACCCTTTTCAGAATCCAGAACTATATCTATGATTACACCACAGctcagtGCAGCATGATGGAGGATGCAATCACTACATTCAACAACAGGAGGTACAAGAATGAAATGCCCATTTCCTGCTACCAAGTTTTGGCCCAGGATTGCACACCTGAGCTGAAATTTGTAGTTCTCTTGAAAAAGGATGCAgagtctgaaaaaaaacaccttaacaTTAAACTTGCTGACATCAATGTCGACTTTTATGCTTTGGGCTCCAATGCACaagttaaaatgaatgaaatggaaGTGCCCATCAGCAGCCTTCCCTACCAGCATCCCTCAGGCTCCATTCAGATCAGGGAGAAGGCTGATGGTTTGTCACTTTATGCTCCTAGTCACGGACTTCAGGAAGTCTACTTTGCCAATGGTCACTGGAAGatCCAAGTTGCAGACTGGATGAAGGGACAGACTTGTGGACTCTGTGGAAAGGCTGATGGAGAAATCAGACAGGAATACACTACACCCAGTGGATACCTGACCAAGAGTTCCGTCAGCTTTGCTCACTCATGGGTGCTTCCTGCCGAAAGCTGTCGTGATGCCAGCCAATGCCGCATGAAACTTGAATCTGTGAAGCTGGAAAAGAAGGCTATTTTGAATGGGCAGGAATCAAAATGCTACTCTGTTGAGCCTGTGCTGCGTTGTCTCCCAGGCTGTGCACCAATCAGAACCACTCCTGTCACTATTGGATTCCACTGCCTGTCCACTGACTCCAACCTCAACATGTTTGATGGAGTATATGAGAAGAGTGTAGACTTAAGAGAGACTACAGATGCTCATGTGGCTTGTCGCTGCACTGAACAGTGTGCTTAA

Function

NR:

description
PREDICTED: vitellogenin-like isoform X2

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0006869 lipid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222223.1 True 4869 mRNA 0.47 34 12260109 12268021

Neighbor

gene id symbol gene type direction distance location
LOC122327080 LOC107655402,LOC107664867,LOC107570371,LOC107664873,LOC107570369,LOC107563524 coding downstream 5363 12248179 ~ 12254746 (-)
LOC122327083 LOC107664867,LOC107570369,LOC107655402,LOC107570371,LOC107664873,LOC107563524 coding downstream 30008 12223487 ~ 12230101 (-)
LOC122327878 LOC107664873,LOC107570371,LOC107664867,LOC107570369,LOC107563524,LOC107655402 coding downstream 53478 12200000 ~ 12206631 (-)
uts2d NA coding downstream 204713 12054271 ~ 12055396 (-)
LOC122327260 LOC107664925,LOC107741564,LOC107655340,LOC107715693,LOC107564927,LOC107560680 coding downstream 206614 12050679 ~ 12053495 (-)
vtg8 LOC107715730 coding upstream 2107 12270128 ~ 12278886 (-)
LOC122327114 NA coding upstream 31986 12300007 ~ 12307611 (-)
LOC122327888 NA coding upstream 40922 12308943 ~ 12311833 (-)
LOC122327886 NA coding upstream 58091 12326112 ~ 12332257 (-)
LOC122327889 NA coding upstream 66257 12334278 ~ 12337674 (-)
LOC122327175 NA non-coding downstream 173195 12083507 ~ 12086914 (-)
LOC122327264 NA non-coding downstream 179992 12076741 ~ 12080117 (-)
G152234 NA non-coding downstream 233314 12026112 ~ 12026795 (-)
LOC122327268 NA non-coding downstream 263064 11993123 ~ 11997045 (-)
G152223 NA non-coding downstream 267076 11992713 ~ 11993033 (-)
G152300 NA non-coding upstream 22895 12290916 ~ 12291260 (-)
G152332 LOC107716433,LOC107659337,LOC107575798 non-coding upstream 142579 12410600 ~ 12419443 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding upstream 150337 12418358 ~ 12426088 (-)
G152339 NA non-coding upstream 158735 12426756 ~ 12426972 (-)
G152340 NA non-coding upstream 166560 12434581 ~ 12434956 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 114534 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 210571 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 414967 11841588 ~ 11845142 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 455411 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 769455 11465852 ~ 11490654 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 89662 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 292822 12560843 ~ 12568727 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 638112 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 930013 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 1111668 13379689 ~ 13409999 (-)

Expression


Co-expression Network