s100b (s100b,LOC107687865,LOC107571703,LOC107600981)


Basic Information

Item Value
gene id s100b
gene name s100b,LOC107687865,LOC107571703,LOC107600981
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7387057 ~ 7389184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222263.1
CTCTTCTTGCCGGTAAGTCTAAAAACGTTGAGCGCCGCACCGCATTAAGATGTCAGACTTAGAGAACTGCCTGGGAACCATCATCGAGGTCTTCCACAAATACTCATCCAAAGAAGGCGACaagttcaaattaaaaaagacCGAACTCAAGGAGCTGCTCACGAATGAATTTCCGACTCTCACCGAGCATGTGAAAGATCAAGCAACAATGGACAGTTTGATGGAAAGCTTGGATACCGATGGCGACTCGGAGTGTGATTTCCAGGAGTTCATGACCTTCATCACCATGGTTACCATCTGCTGCCATGAGTTTTTCGAACACCACGAAGACGAATGAGTCGAATTTAACAAAACGAGTTCGGTTTTGGTAGTTTAATGAGTCCCAGTACATAAAGTTTGCTTTGTTCTTTATCGTATTATTTTAGGATTATTGTTTCGTTTGCACAGAACGTCCATGCAGCTTGTACGACAGTTTGTTTGGCTTATTTTTCTAGAATCAAAACTAGTTCGTAATTTATTACGAAGCATGTTTCTATTATGTTGCCTAGGCATCCCCATCATAAATCTCATTGAGTGAAACGCGGACCAGGTGTTGCGCTCTTGCCGTTTCAATTCCAGACtgattgtgaaatgtttttttttttctgattagcTTCAGACTATTAGGCTGCTATTGACTTACGTCGGATTGTTCCGGGGCCTGAGACAAATCATACCGTGCTTTAAAAAGACCCACCAAAGCGAATTATTCTTCTGAAAATATCTAATACGATGTTTACAACCATCCATAAATGATTTGGAACTTCAGATCAATCCCATGTGTTATTAGAGCCATGAAAACTCGACAGTTTTTCATGTATTGCATGTCCAGAATATTTACTAGCAGATTTTAATAGTACATGAAATGTGTTTTCCCGCTGTAACCTAAGCTAACAGCCGATCTCACAACAACAGGCTTAATTCATGAAGCAAATGGGCAAATCGTACATGAATCTACTGAATGCGACAATTTACTTACGAATGTATTACGGACAATTAAATTGTGTAATAAGGCCCTACAGTGAATGTTTCCTTATAAAGTTAAACAAAAGATGAACGAGTTTCAGAAGCCAAACTGTTAGAATTATGGAATAAAAACTAGCGAAATAAATTGTGAACATGAGATTCAAGTAACGTGTGGATTTTTGAAACATTGAAtgcattagttttaaaataaagatgttcAATAAAA
>XM_043222264.1
CTCCGTTCCAGCCCTATAAATGGACTCCCATCTCCCTCTGCTCCGAATCGCTTCATTCTGACAAACTCTTCTTGCCGAAAACGTTGAGCGCCGCACCGCATTAAGATGTCAGACTTAGAGAACTGCCTGGGAACCATCATCGAGGTCTTCCACAAATACTCATCCAAAGAAGGCGACaagttcaaattaaaaaagacCGAACTCAAGGAGCTGCTCACGAATGAATTTCCGACTCTCACCGAGCATGTGAAAGATCAAGCAACAATGGACAGTTTGATGGAAAGCTTGGATACCGATGGCGACTCGGAGTGTGATTTCCAGGAGTTCATGACCTTCATCACCATGGTTACCATCTGCTGCCATGAGTTTTTCGAACACCACGAAGACGAATGAGTCGAATTTAACAAAACGAGTTCGGTTTTGGTAGTTTAATGAGTCCCAGTACATAAAGTTTGCTTTGTTCTTTATCGTATTATTTTAGGATTATTGTTTCGTTTGCACAGAACGTCCATGCAGCTTGTACGACAGTTTGTTTGGCTTATTTTTCTAGAATCAAAACTAGTTCGTAATTTATTACGAAGCATGTTTCTATTATGTTGCCTAGGCATCCCCATCATAAATCTCATTGAGTGAAACGCGGACCAGGTGTTGCGCTCTTGCCGTTTCAATTCCAGACtgattgtgaaatgtttttttttttctgattagcTTCAGACTATTAGGCTGCTATTGACTTACGTCGGATTGTTCCGGGGCCTGAGACAAATCATACCGTGCTTTAAAAAGACCCACCAAAGCGAATTATTCTTCTGAAAATATCTAATACGATGTTTACAACCATCCATAAATGATTTGGAACTTCAGATCAATCCCATGTGTTATTAGAGCCATGAAAACTCGACAGTTTTTCATGTATTGCATGTCCAGAATATTTACTAGCAGATTTTAATAGTACATGAAATGTGTTTTCCCGCTGTAACCTAAGCTAACAGCCGATCTCACAACAACAGGCTTAATTCATGAAGCAAATGGGCAAATCGTACATGAATCTACTGAATGCGACAATTTACTTACGAATGTATTACGGACAATTAAATTGTGTAATAAGGCCCTACAGTGAATGTTTCCTTATAAAGTTAAACAAAAGATGAACGAGTTTCAGAAGCCAAACTGTTAGAATTATGGAATAAAAACTAGCGAAATAAATTGTGAACATGAGATTCAAGTAACGTGTGGATTTTTGAAACATTGAAtgcattagttttaaaataaagatgttcAATAAAA

Function

symbol description
s100b Predicted to enable several functions, including RAGE receptor binding activity; S100 protein binding activity; and calcium-dependent protein binding activity. Predicted to be involved in positive regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of cell population proliferation. Predicted to be active in cytoplasm; extracellular space; and nucleus. Is expressed in several structures, including digestive system; heart; integument; nervous system; and renal system. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; aspergillosis; and schizophrenia. Orthologous to human S100B (S100 calcium binding protein B).

NR:

description
PREDICTED: protein S100-B-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23770 S100B; protein S100-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222263.1 False 1231 mRNA 0.38 3 7387057 7389119
XM_043222264.1 True 1287 mRNA 0.39 3 7387057 7389184

Neighbor

gene id symbol gene type direction distance location
cntnap5b cntnap5b,LOC107751476,LOC107569969,LOC107653604,LOC107739344,LOC107600954,LOC108411251,LOC105905662 coding downstream 103272 7234901 ~ 7283785 (-)
ahr2 ahr2,LOC107751478,LOC107687867,LOC107600952 coding downstream 280417 7058157 ~ 7106640 (-)
LOC122327118 LOC107751494,LOC107739353,LOC107653563,LOC107600951 coding downstream 384510 6997908 ~ 7002547 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding downstream 392423 6986565 ~ 6994634 (-)
LOC122327116 nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250 coding downstream 415097 6962514 ~ 6971960 (-)
aox5 aox5,LOC107600984,LOC107739315,LOC105905663 coding upstream 105477 7494661 ~ 7514404 (-)
LOC122327800 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490 coding upstream 125555 7514739 ~ 7515901 (-)
LOC122327121 LOC107751463,LOC107571702,LOC107653569,LOC107687862,LOC107739318,LOC107687887,LOC107565490,LOC107600988 coding upstream 128616 7517800 ~ 7518955 (-)
LOC122327123 LOC107687862,LOC107565490,LOC107751463,LOC107687887,LOC107571702,LOC107739318,LOC107653569,LOC107687863 coding upstream 132534 7521718 ~ 7522892 (-)
LOC122327064 LOC107751463,LOC107571702,LOC107687862,LOC107687887,LOC107739318,LOC107653569,LOC107565490,LOC107600988 coding upstream 135252 7524436 ~ 7525617 (-)
LOC122327085 NA non-coding downstream 90502 7290672 ~ 7296555 (-)
G150571 NA non-coding downstream 155569 7230690 ~ 7231488 (-)
G150564 NA non-coding downstream 190374 7196353 ~ 7196683 (-)
LOC122327846 NA non-coding downstream 212612 7171342 ~ 7174445 (-)
G150542 NA non-coding downstream 364360 7022401 ~ 7022697 (-)
G150596 NA non-coding upstream 20229 7409413 ~ 7423399 (-)
LOC122327668 arl4ca,arl4c,LOC107600967,LOC107739351,LOC105905671,LOC106575223 non-coding upstream 61064 7450248 ~ 7470144 (-)
G150626 NA non-coding upstream 94680 7483864 ~ 7484934 (-)
G150628 NA non-coding upstream 96992 7486176 ~ 7498489 (-)
LOC122327778 NA non-coding upstream 235515 7624699 ~ 7628851 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 331495 7020754 ~ 7055562 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other downstream 448057 6822203 ~ 6939000 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 220672 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 897188 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1211166 8600350 ~ 8612744 (-)
G151107 tal1,LOC107669848 other upstream 1494937 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 1624364 9013548 ~ 9171931 (-)

Expression


Co-expression Network