axdnd1 (axdnd1,LOC107669794,LOC107653552,LOC107728533,LOC107578687)


Basic Information

Item Value
gene id axdnd1
gene name axdnd1,LOC107669794,LOC107653552,LOC107728533,LOC107578687
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9248687 ~ 9257262 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222292.1
TCGAGTGATGACCAGTTTTTCAATTAaagttaataattttaatttaaggtaacaataaaagaaaactcATTTGTTTGGCTGCCATGGCATCATTAAACCgctaaattattaataagacaacttttgaatatttaaaaagggTTAATTTTCCTAAGGAAACAACTTATGCTAGCGATAAAagaactgtaatatatatataaagggttATGTTTTGTTCATGTTCATCGAGCGTCTGTTACTCAGGAAAGTTACGTAAGTTAGAGACGCGACGTATCCATGGCAACGAACTTTTATTAGCCGCGGGTTTGGATTAGCGGCTCGCGCGCGCAGGCGCTAGCCGAACCTGATGCACGGAGAACGGCAGAAATTTGGACGTTTTGGCGCCTTTTCGCGGTCCTTCGTCCAGCAGCGAGTTTGTCCGGTGTGAGTATGTCGGTGTCCGTCGGCTGCAGCGCGTCTCCTccggagggagagagagcagagagccGCCGGACGAGGAGATCCACCGACCTGGTGGCAGATCTTCCTCAGGTGAAAGAGAGGACACCTGTTAAAGTCAGAAGCAGCCTCCAAGCCCGTGATGATTTAATTCCAGACGAGCTCCTCGCAACTTTAACATCCACCACCTGTCCTCAAAACAGACTCGGACCCCTCCGATTAACCAAAACCCCTAGGGACTTTAAGGTTTGTTTAATACATCGCACTGATGCCGTGTGGCACCATCCCGCTAGACGCGAGAAATACCAATACTTTCTCAACCAGCCGACTTCACTGACCGGAGCTGGAAGAGACATATCCTTCCTCTGCGATGCTCGACTGCCTCTCCCACCAGCGGCTGAACGAAGCCCCGCTCAGGGAGATCAAAATGACGCAAGTTCACTGGAAACTTTAATCCCGGAAGAATATCACATCATAAAAAACAAAGGCCTTAAGGGACTGCAGTGCTATGACGACAAATTTACGGTTCTCCTAGAAGATGACAAACAGAAGCTAAGAGTCTTTCCATCAATGAAACCAAGCGGACGTCTTGAGGTGATACAGTTAATGAAAGTGATGGACAAAATGCTGGAAAAAGCAGGTGTCAATCAAGAGTTTCAAGAGTTAACAGAACTCTCACAgATTGAAAATTTACTGGAGCTGGTTCACATCGAGCAGAACATCTACAACATAGTATTCCACGAGCTAATCCGTCAGGTCAGCGTTGAGTGTGTCGAAAGAGGACAACTCCTCGCCAAGATCAGGGAGAGGTACGTGGCTCTACTTGACCGTATCCCACGGCAGGTGAAGGGTCTGCACACGGAAACCTTAGCGCAGAAGGCTCTAGACCGCCGGCTCACTGAAGAAATCATTCACTTCAAAAGCTCCATTGCAAAGCTTAATTTGGAACTGAGTGCTATGAAAGAACATGATGAGAATGTGTCCAAAGAGGCAGAGGAAGTCAAGGAGGAGCTCGCTAAAGCCTTGGAGGAGTCACAACGCAATGCAAATATTGTAGCAGAGTACCATGAGCTTTATGAGCTGCAGCGAAGGAGACTTGAAAGACAGATGTCTCAGCTATGTGATGAAACAGACCTCTGGAGAAAAGCCACCTATAGTCTTGCAGTCAAGataataaagataaataaacttCATCTGGTCAGACGGCTACATATTAGTGAGCAGACCTGGGCCAAGACTGCAGATCATTTCACTGTTTTCCTAACAGCAAAGgaCTCTGAGGATGTTTCTTACATCATGGAATTGACTGACCAATGGAAAGATAAACTGACCGACTTCATGGAGAACCTCAGAGAGGCTGAAAATATACAGCGCAAGACCATAGAATCTATCCGTGCAAATGTTGTCAAGTGGCACAAGTTTTATGTAGAGAAATCAAGGAACCCTAATATAAATGCTGACAAGTCTTCAGAAGATGAGCTGTCCCAGGACCTGAAGCAATGGTCAAAGGTCTTGACACAGCAGTGTGAGAGATATGGAGGAGAGGACCTAGTGTCTGCTCAGGAAACACTTGAAAAGCTAACAAATATACAAGAGTCCTGGACTGAGGTTTGTCTACAGCTCTTTAGGAGACACCCTGGTGCAGATGGAGGCCCACCTAAAGGACAAGAGGCCATGAGGGAGTTGGCAAAGGCCATTACAGGGCTCCAGAACCAATTGGGAATCCGTATTAGTGGAGAAAGTGGGATCCATGCAACGCTAATGTTGCTTATTGAAAATATGGAGTTCTGGTCAAGAAGATTTAAGACCTTGAGTGGACTTACAGAGGAGCAGTTGTTGGGTGATTGGCTCAAGTTGGAGGAAGCTCTTGTTAACTTGATGAATCTGTCTAAGGAGGCTCTCCAACTAGTGAACAGCACACAGTCAGAACGGGACAGGGCTAAAAAGAAATCCCACACCAAGATTGAAATGAATGAGGTCTTAAAGGCAATGAAGGAATTCCGGTTCTCTCAAGAAAATTTTTTCAACTGTGAAAATATGAGGCTTCATGAGGAGGTAACTTCTCTTCACACCAAGTTGATTCGATGGATGGTGGACCTTCTGCTTATGATGGTGCCAGTCCAAGAACCCAATCTTCCAATGCCTGAATTAAACACCACTGTGGACGTGTCTGTTGAGAAGCTGGAGGATGATGCCAGGAACCTCTCTGGGAAGCTTGACTACTTCTCCAAGTACATCACAAGCTCTTGTCAGGCTATTGTGGAGCAGGCAATACAGAAGAGCTCAGCTCAGTATGACACAGAGAATGAGCTCTATCAACTTGCTAAACTTCAGAAAGAGTGTGGCGAGTGGGTGGAGGCCTGTCGAATACTACTGTCAGATGTGAAGGGAAGCCTTGTGGACCTGCAGCTGTCTGGAAAAACTGTTCCACAGCCTCTCAAACAACAACCAGATGAACCTATCCAAGTAGATGAAGAGGAACACTTGACCATAAAAGACACCACTGGGCCTTATTCTTTCCAAAGTGCTGATGAATATGCTGAAGAAAAGGCCAGCACACATGACAAAGATGGCTCAGTCATGAAGCTTGTTGGTTATGATGGCAATATCATCGAGAAGAACTTGGGAGAAGACACAGTCCAACTTACAGGGACGGAAGAACTTGTGGTATCTCCTCACACTGAAAATGCCAAGGACGCCTTCAATGCAttagaaacactgaaaactcTTCAGCAAGGGCTTCTGGATGTAGAAAAGCGAGCTATCAGCGCGGAGGTACGAGCGTTAAAGGCAGAGGAAGACCTACAGGCAGCTCTGGACAAGATTCAAGATCTGGAGAGACAGCTACAGGCTCGGCCCAGTGTGGAGACCAAGTCGAGCAAGAAGAATGTAGCACCCTCACACAAGGCCCCCAGCACCCCTTCTGAAGCTAAAACGAGAAGTCAGAAACCTGAAGCCAGCCCAAAACTGTCCAGAGTCACCAAAAAACGCTAAATGGGACAAAATACCACACTGGAGCTTATgcgtggtaaaaaaaaaaaaaaaaacataaaacacatctgAATTTGAAGTGTAATTGTATTGCAGATAacgtaaaataattattcattatgaGGTTTGCTGAAGATTACatgctgcagtctgtaacttttttttgtttacaattaaGATAATAAACAAGTAAATCATAAA

Function

symbol description
axdnd1 Orthologous to human AXDND1 (axonemal dynein light chain domain containing 1).

NR:

description
axonemal dynein light chain domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222292.1 True 3630 mRNA 0.45 25 9248687 9257262

Neighbor

gene id symbol gene type direction distance location
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding upstream 653 9236099 ~ 9248034 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding upstream 13457 9228408 ~ 9235230 (+)
atpaf1 atpaf1,LOC107653579,LOC107715059 coding upstream 21386 9223810 ~ 9227301 (+)
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding upstream 25151 9198024 ~ 9223536 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding upstream 243782 8995971 ~ 9004905 (+)
tdrd5 LOC107669834,LOC107728589,LOC107592689,LOC107715068,LOC107653580,LOC107576589 coding downstream 3500 9260762 ~ 9270135 (+)
fam163ab LOC107728553,LOC107592741,LOC107669804 coding downstream 15492 9272754 ~ 9281842 (+)
rabgap1l rabgap1l,LOC107728556,LOC107715121,LOC106613570,LOC107592725,LOC106574055,LOC107655181,LOC107669795 coding downstream 26524 9283786 ~ 9360315 (+)
gpr52 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding downstream 52544 9309806 ~ 9317007 (+)
rab11ba rab11b,LOC107599444,LOC107592688,LOC107655249,LOC108429533,LOC102310619 coding downstream 192027 9449289 ~ 9454347 (+)
G150983 NA non-coding upstream 101299 9145211 ~ 9147388 (+)
LOC122327612 NA non-coding upstream 177515 9068732 ~ 9071172 (+)
G150970 NA non-coding upstream 218777 9025901 ~ 9029910 (+)
G150969 NA non-coding upstream 234835 9013534 ~ 9013852 (+)
G150967 NA non-coding upstream 253204 8995206 ~ 8995483 (+)
G151163 NA non-coding downstream 20428 9277690 ~ 9283004 (+)
G151178 NA non-coding downstream 103166 9360428 ~ 9365322 (+)
G151194 NA non-coding downstream 215724 9472986 ~ 9475031 (+)
G151210 LOC107669820,LOC107592722,LOC107655244,LOC107599472 non-coding downstream 257478 9514740 ~ 9515568 (+)
G151294 NA non-coding downstream 343294 9600556 ~ 9667133 (+)
G150965 NA other upstream 259996 8988186 ~ 8988691 (+)
G150946 NA other upstream 326720 8921698 ~ 8921967 (+)
G150945 NA other upstream 328907 8919279 ~ 8919780 (+)
G150940 NA other upstream 346376 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 356488 8890622 ~ 8892199 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 197576 9454838 ~ 9530165 (+)
G151232 NA other downstream 320417 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 630901 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 638179 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 666285 9923547 ~ 9963634 (+)

Expression


Co-expression Network